Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127564_Y3551_DEL0132420

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr01

43535594

43535829

SV Length:

Query Start:

Query End:

Allele sv Count:

237 bp

37968484

37968720

14

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127564_125827_DEL0134790	Chr01	43535594	43535829	38390604	38390840	237
127564_127518_DEL0132660	Chr01	43535594	43535829	38360544	38360780	237
127564_127742_DEL0134130	Chr01	43535594	43535829	37861026	37861262	237
127564_132424_DEL0133730	Chr01	43535594	43535829	37981632	37981868	237
127564_FH838_DEL0133230	Chr01	43535594	43535829	38351261	38351497	237
127564_G630_DEL0132570	Chr01	43535594	43535829	38274017	38274253	237
127564_IR64_DEL0139270	Chr01	43535594	43535829	37907637	37907873	237
127564_J4155_DEL0136470	Chr01	43535594	43535829	38145236	38145472	237
127564_J4155S_DEL0137770	Chr01	43535594	43535829	38621817	38622053	237
127564_Lemont_DEL0161120	Chr01	43535594	43535829	37755494	37755730	237
127564_R527_DEL0130660	Chr01	43535594	43535829	37929114	37929350	237
127564_Y3551_DEL0132420	Chr01	43535594	43535829	37968484	37968720	237
127564_Y58S_DEL0141830	Chr01	43535594	43535829	37082305	37082541	237
127564_MH63RS3_DEL0134070	Chr01	43535594	43535829	38545514	38545750	237

>127564_Y3551_DEL0132420
GTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGCCT