Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 125619_Y3551_TRA0144280

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

TRA

Os XI-2B: LARHA MUGAD | Os125619RS1

Os XI-1B: Y3551 | Y3551

Chr01

43467533

43467768

SV Length:

Query Start:

Query End:

Allele sv Count:

237 bp

37968484

37968720

14

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
125619_125827_TRA0141690	Chr01	43467533	43467768	38390604	38390840	237
125619_127518_TRA0149000	Chr01	43467533	43467768	38360544	38360780	237
125619_127742_TRA0142710	Chr01	43467533	43467768	37861026	37861262	237
125619_132424_TRA0146100	Chr01	43467533	43467768	37981632	37981868	237
125619_FH838_TRA0144010	Chr01	43467533	43467768	38351261	38351497	237
125619_G630_TRA0144520	Chr01	43467533	43467768	38274017	38274253	237
125619_IR64_TRA0148040	Chr01	43467533	43467768	37907637	37907873	237
125619_J4155_TRA0140210	Chr01	43467533	43467768	38145236	38145472	237
125619_J4155S_TRA0141630	Chr01	43467533	43467768	38621817	38622053	237
125619_Lemont_TRA0163710	Chr01	43467533	43467768	37755494	37755730	237
125619_R527_TRA0141900	Chr01	43467533	43467768	37929114	37929350	237
125619_Y3551_TRA0144280	Chr01	43467533	43467768	37968484	37968720	237
125619_Y58S_TRA0149040	Chr01	43467533	43467768	37082305	37082541	237
125619_MH63RS3_TRA0145110	Chr01	43467533	43467768	38545514	38545750	237

>125619_Y3551_TRA0144280
GTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGCCT