Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 117534_Y3551_OTH0146800

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Chr01

36459361

36459432

SV Length:

Query Start:

Query End:

Allele sv Count:

290 bp

37968429

37968718

20

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
117534_125827_OTH0144410	Chr01	36459361	36459432	38390549	38390838	290
117534_127518_OTH0146200	Chr01	36459361	36459432	38360489	38360778	290
117534_127564_OTH0144380	Chr01	36459361	36459432	38305725	38306014	290
117534_127742_OTH0146360	Chr01	36459361	36459432	37860971	37861260	290
117534_132424_OTH0143630	Chr01	36459361	36459432	37981577	37981866	290
117534_D62_OTH0146150	Chr01	36459361	36459432	37793267	37793556	290
117534_FH838_OTH0147060	Chr01	36459361	36459432	38351206	38351495	290
117534_G630_OTH0147150	Chr01	36459361	36459432	38273962	38274251	290
117534_HZ_OTH0145420	Chr01	36459361	36459432	38339563	38339852	290
117534_IR64_OTH0144460	Chr01	36459361	36459432	37907582	37907871	290
117534_J4155_OTH0147020	Chr01	36459361	36459432	38145181	38145470	290
117534_J4155S_OTH0147380	Chr01	36459361	36459432	38621762	38622051	290
117534_Lemont_OTH0144030	Chr01	36459361	36459432	37755439	37755728	290
117534_R498_OTH0146560	Chr01	36459361	36459432	37725980	37726269	290
117534_R527_OTH0146930	Chr01	36459361	36459432	37929059	37929348	290
117534_S548_OTH0145270	Chr01	36459361	36459432	37609488	37609777	290
117534_WSSM_OTH0145980	Chr01	36459361	36459432	37858337	37858626	290
117534_Y3551_OTH0146800	Chr01	36459361	36459432	37968429	37968718	290
117534_Y58S_OTH0139280	Chr01	36459361	36459432	37082250	37082539	290
117534_MH63RS3_OTH0147820	Chr01	36459361	36459432	38545459	38545748	290

>117534_Y3551_OTH0146800
AAGAAGATGAGATAAGAGATGAGCCACACGCCAATATCTAGTTGGATATGCAGGAGTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGC