Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Basic Info

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Location	Links
OsZS97_12G0094500	OGI:12016150 \| 2/50	Zhenshan 97 \| ZS97RS3 \| HZAU	Chr12:5571856-5572926	Homologues MicroCollinearity
Gene Symbol	-
Mutant	-
Stuctural Variations	Lemont_ZS97RS3_INS1217540,Lemont_ZS97RS3_INS1200590,Basmati1_ZS97RS3_INV1208010,Basmati1_ZS97RS3_INS1208970,132278_ZS97RS3_INS1217860,J4155S_ZS97RS3_OTH1204640,J4155S_ZS97RS3_DEL1204510,J4155S_ZS97RS3_INV1204620,NamRoo_ZS97RS3_INS1200570,ZH11_ZS97RS3_INS1216960,ZH11_ZS97RS3_INS1200490,J4155_ZS97RS3_OTH1204570,J4155_ZS97RS3_DEL1204450,J4155_ZS97RS3_INV1204550,FS32_ZS97RS3_OTH1203610,FS32_ZS97RS3_DEL1203500,FS32_ZS97RS3_INV1203590,Tumba_ZS97RS3_INV1203280,DG_ZS97RS3_INS1201880,IR64_ZS97RS3_DEL1203830,IR64_ZS97RS3_INV1203810,D62_ZS97RS3_OTH1204240,D62_ZS97RS3_DEL1204120,D62_ZS97RS3_INV1204220,G8_ZS97RS3_INV1203370,G630_ZS97RS3_OTH1204400,G630_ZS97RS3_DEL1218010,G630_ZS97RS3_DEL1204270,G630_ZS97RS3_INV1204380,G630_ZS97RS3_INS1230470,DHX2_ZS97RS3_INS1216930,DHX2_ZS97RS3_INS1200510,II32_ZS97RS3_DEL1203410,II32_ZS97RS3_INV1203400,127652_ZS97RS3_OTH1207610,127652_ZS97RS3_DEL1207470,127652_ZS97RS3_INV1207560,CN1_ZS97RS3_OTH1202090,CN1_ZS97RS3_INV1202050,Azucena_ZS97RS3_INS1218720,127742_ZS97RS3_DEL1203760,127742_ZS97RS3_INV1203750,Y58S_ZS97RS3_OTH1204740,Y58S_ZS97RS3_DEL1204630,Y58S_ZS97RS3_INV1204720,R9311_ZS97RS3_DEL1204180,R9311_ZS97RS3_INV1204170,HZ_ZS97RS3_DEL1203980,HZ_ZS97RS3_INV1203970,Kosh_ZS97RS3_INS1216910,Kosh_ZS97RS3_DEL1223850,KY131_ZS97RS3_INS1216950,KY131_ZS97RS3_INS1215820,02428_ZS97RS3_INS1217180,02428_ZS97RS3_DEL1232530,TM_ZS97RS3_OTH1205630,TM_ZS97RS3_DEL1205530,TM_ZS97RS3_INV1205610,LJ_ZS97RS3_INS1237350,LJ_ZS97RS3_DEL1241190,S548_ZS97RS3_DEL1203010,S548_ZS97RS3_INV1202990,Nipponbare_ZS97RS3_DEL1208400,Nipponbare_ZS97RS3_DEL1209400,132424_ZS97RS3_OTH1204010,132424_ZS97RS3_DEL1203880,132424_ZS97RS3_INV1203990,125827_ZS97RS3_DEL1204060,125827_ZS97RS3_OTH1204170,125827_ZS97RS3_INV1204150,128077_ZS97RS3_INS1216370,128077_ZS97RS3_INS1200540,117425_ZS97RS3_INV1208100,117425_ZS97RS3_INS1209080,YX1_ZS97RS3_DEL1205330,YX1_ZS97RS3_INV1205320,OglaRS2_ZS97RS3_DEL1243740,R527_ZS97RS3_DEL1203380,R527_ZS97RS3_INV1203360,125619_ZS97RS3_INV1206970,G46_ZS97RS3_INS1201540,127518_ZS97RS3_OTH1204530,127518_ZS97RS3_DEL1204420,127518_ZS97RS3_INV1204510,WSSM_ZS97RS3_OTH1203860,WSSM_ZS97RS3_DEL1203710,WSSM_ZS97RS3_INV1203810,117534_ZS97RS3_INS1211600,127564_ZS97RS3_INS1210670, More
DNA seq	CTAATCGTTGATGGTTACGAACAGTAGCGCTCGTAGGTTAAACTCCTCCTGTTTGTCCTCATCCCACACGGGGACACCTTCCTTCTTCCACAACAGTTTAAGATCTTCGACCAGTGGTCTTAGGAATACATCGATGTCGTTACCAGGTTGCTTGGGGCCTTGAATAATAATCGGCATCATTATGTACTTCCTCTTCATGCATAGCCAAGGGGGGAGGTTGTAGATACACATCGTAACGGGCCAAGTGCTATGGCCGCTGCTCATCTCTCCAAAAGGATTCATGCCATCCGTACTTAAACCAAACCGTATGTTTCGTGCGTCCTTTCCAAAGTCTTTAAATTTTCTGTCGATGTTTCGCCACTGCGAACCATCTGCGGGGTGTCTCAGCATCCCGTCCTGTTGACGTTCTTCAGCATGCCAACGCATCATTCTAGCATTCCCCTTGTTCCTGAACAAACGCCTTAGCCGTGGTATTATAGGGAAATACCACATCACCTTAGCAGGAATTCTCTTCTTCGTTAGCTGCCCGTCAACCTCACCTGGATCATCTCGTCTAATCTTGTATCGTAGTGCTTTACAAACAGCGCATGCTTCTAGGTTCTCGTACTCCTCACCACGATATAGGATACAATCATTCGGACATGCGTGAATCTTCTGAACTTCCAGTCCTAGAGGGCAGACTATCTTCTTAGCCTCGTACGTTGTCTCGGGCAATTTGTTTCCCTCCGGAAGAATGTTCTTGACGAGTTTCAATAAATCGCCAAATGCCTTGTCACTACCACCATTTTTTGCCTTCCATTGCAAGAACTCCAGAGTGGTATCCAACTTTTTGTGCCCCTGCTCGCAACCTGGGAAAAACGACGTTCTGTGATCCTCTAACATCTTGTCCAATTTATGGGCCCCCTTTTCACTTTCGCAGTCCTCCTTGGCATCCTGCAACATCTGACCAAGATCATCTGCAACGTCGTTATAATCAGCATCTCTATCCTCCTCGCCCGTTTGATTTCCTTCAGATCCAGCGTACTGAGCAAAGTCTAGAATATTGTCGTCTTCCACTTCATCTTTTTCCAT More
CDS seq	MEKDEVEDDNILDFAQYAGSEGNQTGEEDRDADYNDVADDLGQMLQDAKEDCESEKGAHKLDKMLEDHRTSFFPGCEQGHKKLDTTLEFLQWKAKNGGSDKAFGDLLKLVKNILPEGNKLPETTYEAKKIVCPLGLEVQKIHACPNDCILYRGEEYENLEACAVCKALRYKIRRDDPGEVDGQLTKKRIPAKVMWYFPIIPRLRRLFRNKGNARMMRWHAEERQQDGMLRHPADGSQWRNIDRKFKDFGKDARNIRFGLSTDGMNPFGEMSSGHSTWPVTMCIYNLPPWLCMKRKYIMMPIIIQGPKQPGNDIDVFLRPLVEDLKLLWKKEGVPVWDEDKQEEFNLRALLFVTIND
Protein seq	MEKDEVEDDNILDFAQYAGSEGNQTGEEDRDADYNDVADDLGQMLQDAKEDCESEKGAHKLDKMLEDHRTSFFPGCEQGHKKLDTTLEFLQWKAKNGGSDKAFGDLLKLVKNILPEGNKLPETTYEAKKIVCPLGLEVQKIHACPNDCILYRGEEYENLEACAVCKALRYKIRRDDPGEVDGQLTKKRIPAKVMWYFPIIPRLRRLFRNKGNARMMRWHAEERQQDGMLRHPADGSQWRNIDRKFKDFGKDARNIRFGLSTDGMNPFGEMSSGHSTWPVTMCIYNLPPWLCMKRKYIMMPIIIQGPKQPGNDIDVFLRPLVEDLKLLWKKEGVPVWDEDKQEEFNLRALLFVTIND
Function	-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_12G0094500	OsZS97_12T0094500.1	Chr12	5571856	5572926	-	makerRMon
CDS seq	ATGGAAAAAGATGAAGTGGAAGACGACAATATTCTAGACTTTGCTCAGTACGCTGGATCTGAAGGAAATCAAACGGGCGAGGAGGATAGAGATGCTGATTATAACGACGTTGCAGATGATCTTGGTCAGATGTTGCAGGATGCCAAGGAGGACTGCGAAAGTGAAAAGGGGGCCCATAAATTGGACAAGATGTTAGAGGATCACAGAACGTCGTTTTTCCCAGGTTGCGAGCAGGGGCACAAAAAGTTGGATACCACTCTGGAGTTCTTGCAATGGAAGGCAAAAAATGGTGGTAGTGACAAGGCATTTGGCGATTTATTGAAACTCGTCAAGAACATTCTTCCGGAGGGAAACAAATTGCCCGAGACAACGTACGAGGCTAAGAAGATAGTCTGCCCTCTAGGACTGGAAGTTCAGAAGATTCACGCATGTCCGAATGATTGTATCCTATATCGTGGTGAGGAGTACGAGAACCTAGAAGCATGCGCTGTTTGTAAAGCACTACGATACAAGATTAGACGAGATGATCCAGGTGAGGTTGACGGGCAGCTAACGAAGAAGAGAATTCCTGCTAAGGTGATGTGGTATTTCCCTATAATACCACGGCTAAGGCGTTTGTTCAGGAACAAGGGGAATGCTAGAATGATGCGTTGGCATGCTGAAGAACGTCAACAGGACGGGATGCTGAGACACCCCGCAGATGGTTCGCAGTGGCGAAACATCGACAGAAAATTTAAAGACTTTGGAAAGGACGCACGAAACATACGGTTTGGTTTAAGTACGGATGGCATGAATCCTTTTGGAGAGATGAGCAGCGGCCATAGCACTTGGCCCGTTACGATGTGTATCTACAACCTCCCCCCTTGGCTATGCATGAAGAGGAAGTACATAATGATGCCGATTATTATTCAAGGCCCCAAGCAACCTGGTAACGACATCGATGTATTCCTAAGACCACTGGTCGAAGATCTTAAACTGTTGTGGAAGAAGGAAGGTGTCCCCGTGTGGGATGAGGACAAACAGGAGGAGTTTAACCTACGAGCGCTACTGTTCGTAACCATCAACGATTAG More
Protein seq	MEKDEVEDDNILDFAQYAGSEGNQTGEEDRDADYNDVADDLGQMLQDAKEDCESEKGAHKLDKMLEDHRTSFFPGCEQGHKKLDTTLEFLQWKAKNGGSDKAFGDLLKLVKNILPEGNKLPETTYEAKKIVCPLGLEVQKIHACPNDCILYRGEEYENLEACAVCKALRYKIRRDDPGEVDGQLTKKRIPAKVMWYFPIIPRLRRLFRNKGNARMMRWHAEERQQDGMLRHPADGSQWRNIDRKFKDFGKDARNIRFGLSTDGMNPFGEMSSGHSTWPVTMCIYNLPPWLCMKRKYIMMPIIIQGPKQPGNDIDVFLRPLVEDLKLLWKKEGVPVWDEDKQEEFNLRALLFVTIND More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0	0	0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os12g12210	SBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_12G0088700	RBH	0	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_12G0093100	RBH	0.0121	0	0.0042835
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Os XI: R9311 \| R9311 \| AGIS	R9311C04g14787	SBH	None	None	None
Os XI-adm: HZ \| HZ \| PKU	OsHZ_12g0093600	SBH	None	None	None
Os XI-adm: J4155S \| J4155S \| PKU	OsJ4155_12g0086300	SBH	None	None	None
Os XI-adm: LK638S \| LK638S \| PKU	OsLK638S_12g0066500	SBH	None	None	None
Os XI-adm: XL628S \| XL628S \| PKU	OsXL628S_12g0085700	SBH	None	None	None
Os GJ-temp: 02428 \| 02428 \| SICAU	Os02428G1020010100.01	SBH	None	None	None
Os cB: Basmati1 \| Basmati1 \| SICAU	OsBasmati1G1237573800.01	SBH	None	None	None
Os O.glaberrima: Ogla \| OglaRS2 \| DIADE	Oglab_031261	SBH	None	None	None
Os XI-1A: CN1 \| CN1 \| SICAU	OsCN1G1233736000.01	SBH	None	None	None
Os XI-1A: D62 \| D62 \| SICAU	OsD62G0413397100.01	SBH	None	None	None
Os XI-1A: DG \| DG \| SICAU	OsDGG1227102000.01	SBH	None	None	None
Os GJ-temp: DHX2 \| DHX2 \| SICAU	OsDHX2G1232614600.01	SBH	None	None	None
Os XI-adm: FH838 \| FH838 \| SICAU	OsFH838G1231594400.01	SBH	None	None	None
Os XI-1A: FS32 \| FS32 \| SICAU	OsFS32G0407521600.01	SBH	None	None	None
Os XI-1A: G46 \| G46 \| SICAU	OsG46G1222403800.01	SBH	None	None	None
Os XI-adm: G630 \| G630 \| SICAU	OsG630G1280003416.01	SBH	None	None	None
Os XI-1B: G8 \| G8 \| SICAU	OsG8G1280002902.01	SBH	None	None	None
Os XI-1A: II32 \| II32 \| SICAU	OsII32G1280002593.01	SBH	None	None	None
Os XI-1B: J4155 \| J4155 \| SICAU	OsJ4155G1280003289.01	SBH	None	None	None
Os GJ-temp: Kosh \| Kosh \| SICAU	OsKoshG1233576600.01	SBH	None	None	None
Os GJ-temp: KY131 \| KY131 \| SICAU	OsKY131G1219031100.01	SBH	None	None	None
Os GJ-trp: Lemont \| Lemont \| SICAU	NA	NA	NA	NA	NA
Os GJ-adm: LJ \| LJ \| SICAU	OsLJG1224781600.01	SBH	None	None	None
Os GJ-sbtrp: NamRoo \| NamRoo \| SICAU	OsNamRooG1231807600.01	SBH	None	None	None
Os XI-1B: R498 \| R498 \| SICAU	OsR498G0509883200.01	SBH	None	None	None
Os XI-1B: R527 \| R527 \| SICAU	OsR527G1223358900.01	SBH	None	None	None
Os XI-1B: S548 \| S548 \| SICAU	OsS548G1280201987.01	SBH	None	None	None
Os XI-2: TM \| TM \| SICAU	TMG1280002602.01	SBH	None	None	None
Os XI-3: Tumba \| Tumba \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: WSSM \| WSSM \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y3551 \| Y3551 \| SICAU	OsY3551G1227238400.01	SBH	None	None	None
Os XI-1B: Y58S \| Y58S \| SICAU	OsY58SG1280002589.01	SBH	None	None	None
Os XI-adm: YX1 \| YX1 \| SICAU	OsYX1G1280002532.01	SBH	None	None	None
Os GJ-temp: ZH11 \| ZH11 \| SICAU	OsZH11G1230973000.01	SBH	None	None	None

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