Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0049600 | OGI:12007710 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr12:2865415-2867314 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | GATTGCACGAGGTTAAATTTATTTTTTTAAAACAAAGAACAACTCATGCATCATGCATGTAGAAGTATAGAACAGTAGAAGAGTCATTCATGCATGTATAGAAACAGTAGTAGTGGTAGAAGAAAAGGGGAAGAGAACAAAATCCCCATTGGGGTATTACTTTGTTTCTTCAGGTTCAGGGGAGGCAGCAGGAGAAGGATACATCAACTTCACAGTTTGTTCATGGACCCACTCACAGTCACATACTACAGATGACACATACATACTTGCAAAACATGTCAATTTTTCCTCTCTCTCTCTCTCTCCTGTTTGTTTCTCATGGTGTGTCACCATCTCTCTCCTCCCTCTCCTTTTCAACCTGATGTTTCCTGAAACCTCCCCACCTGCTGCAAGGGCCCCCGTACTGTAAGTAGGGTTTCTGGAAGACAAGAATGTAAAAAAAACCCAGGAAAAGGGGCACTCTGATGATTCATGGAAGGAAGATTGCCCGGGAAACAAGGGATCTCTCCCCACTTCCTTCTTCTTTTTTCCCTTCCAACAGGTCAATTCAATCGAACCTGTCACTTGGTTCAGAGTGTAGTAGTAGTAGGCTGGTGGTAGTAGTAACTAGTTTCACTGTTGGTGGTTAGGATTCTGCAAGCAAAGGCCTCAGATCTCCTCATCATCTCATCAACTAGCTGCCCCTGTTGTGCAAAAACAAGAGAATTGTTTGAAAACCTTAGAATTAACAATTGAATTTGATTTGGAGAAGTGCTGGTCGTTGCTGTCATTTGATTTCTAGTTCGTTCTCTACTAGCTTAATGCTGCAACTGTAATTCTAGATGGCTGTTAAAACTGAAAAAATACTGACCAGTAATTTGGCACTGTAGACACTGCGGCGTAGGGGCTCTGGTGGTGCATGTAGCCGTACATTGCCGTCGCCTGATCCGCCTCCGGCTCCGGGCCGCAGTCGAGGTTAACGCCGAACAGCCTGAGCCGCCTCGACGGCGGCGGCGCCGACGCCGCGCTGCTGCTCTTGGCGTCTGCTTCTCTCTGCGACTCTCCTGCAAATTGTTCCACCGCGAAAGGTATATGATCTTTAATCACTTGCTGTAGTTGCATGTTAATTATAGTATCAAAGTGCTTAATTAATTTGTTCTTGAGTTTCTACTACTAGATATGCAATTGCGTGTTTAGTTAGTTACCTGCGTGTAGTATGTCGCTGTGATCTTGGTCTACGGAGCGATGGTAGGCATATGAATTGGCAGGGCTGGTAGGGTCGTAGGACGAGCCCGACGTGCTGTAACACATTGGGCTCCACGGCTGCTGCTCGCCGCCGTTGAGGGCAGGCGGCTGCGGCGTGACGCGAACGGCGGGCGGCGGCGCGGGCGCGCTCTCGCCGCGGCGCCTGCAGCCGATGAAGAGGCGGTCGGCGGCGCCGAGGCCGCGGACGCGCTCGAAGTGGACGACGTCGCCGGCGTCGAGGCGCTTCTCCTTGACGTAGCGGCTCCAGCCCTTGGTGAGCACGTAGCTCTGGCTGCTGGTCCAGTAGGAGTAGCGGAACCGCCATGGCTTGCCGGACTCGTCCTCGAAGGAGAGGAGGAGGCCCTTCTCACCGGAGTCGCCGCCGCCGAGCGGGAAGTACCTCTCGGCGTGCTGCTTGGGGATCACCAGCCTGTTGAGCTTGCCGACGTCGCTCGGCGTCAGCGGCTTCTCGAACAGGTGCTCCCTCTCGTAGTGGTGGTGGTAGTGCAGGTTGGTGTACATGGCTACACCCCATGGCCACGCCTGGGGGTGCCCCTGGGCGAGAGGGTGCATGGCCATTGCTGCGGCTGAGCTAGAGCTGATCGATCGGTCGATCGAAACAAAGATGTGTTGGGAGCAAAAGTTGGGTAGTGGAGAAGAGGAGAGGAGAGGAGAG
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| CDS seq | MAMHPLAQGHPQAWPWGVAMYTNLHYHHHYEREHLFEKPLTPSDVGKLNRLVIPKQHAERYFPLGGGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGLGAADRLFIGCRRRGESAPAPPPAVRVTPQPPALNGGEQQPWSPMCYSTSGSSYDPTSPANSYAYHRSVDQDHSDILHAGESQREADAKSSSAASAPPPSRRLRLFGVNLDCGPEPEADQATAMYGYMHHQSPYAAVSTVPNYWGS |
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| Protein seq | MAMHPLAQGHPQAWPWGVAMYTNLHYHHHYEREHLFEKPLTPSDVGKLNRLVIPKQHAERYFPLGGGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGLGAADRLFIGCRRRGESAPAPPPAVRVTPQPPALNGGEQQPWSPMCYSTSGSSYDPTSPANSYAYHRSVDQDHSDILHAGESQREADAKSSSAASAPPPSRRLRLFGVNLDCGPEPEADQATAMYGYMHHQSPYAAVSTVPNYWGS |
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| Function | B3 domain-containing protein Os11g0156000 [UniProtKB/Swiss-Prot:Q53QI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0049600 | OsMH63_12T0049600.1 | Chr12 | 2865415 | 2867314 | - | maker | ||
| CDS seq | ATGGCCATGCACCCTCTCGCCCAGGGGCACCCCCAGGCGTGGCCATGGGGTGTAGCCATGTACACCAACCTGCACTACCACCACCACTACGAGAGGGAGCACCTGTTCGAGAAGCCGCTGACGCCGAGCGACGTCGGCAAGCTCAACAGGCTGGTGATCCCCAAGCAGCACGCCGAGAGGTACTTCCCGCTCGGCGGCGGCGACTCCGGTGAGAAGGGCCTCCTCCTCTCCTTCGAGGACGAGTCCGGCAAGCCATGGCGGTTCCGCTACTCCTACTGGACCAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTACGTCAAGGAGAAGCGCCTCGACGCCGGCGACGTCGTCCACTTCGAGCGCGTCCGCGGCCTCGGCGCCGCCGACCGCCTCTTCATCGGCTGCAGGCGCCGCGGCGAGAGCGCGCCCGCGCCGCCGCCCGCCGTTCGCGTCACGCCGCAGCCGCCTGCCCTCAACGGCGGCGAGCAGCAGCCGTGGAGCCCAATGTGTTACAGCACGTCGGGCTCGTCCTACGACCCTACCAGCCCTGCCAATTCATATGCCTACCATCGCTCCGTAGACCAAGATCACAGCGACATACTACACGCAGGAGAGTCGCAGAGAGAAGCAGACGCCAAGAGCAGCAGCGCGGCGTCGGCGCCGCCGCCGTCGAGGCGGCTCAGGCTGTTCGGCGTTAACCTCGACTGCGGCCCGGAGCCGGAGGCGGATCAGGCGACGGCAATGTACGGCTACATGCACCACCAGAGCCCCTACGCCGCAGTGTCTACAGTGCCAAATTACTGGGGCAGCTAG
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| Protein seq | MAMHPLAQGHPQAWPWGVAMYTNLHYHHHYEREHLFEKPLTPSDVGKLNRLVIPKQHAERYFPLGGGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGLGAADRLFIGCRRRGESAPAPPPAVRVTPQPPALNGGEQQPWSPMCYSTSGSSYDPTSPANSYAYHRSVDQDHSDILHAGESQREADAKSSSAASAPPPSRRLRLFGVNLDCGPEPEADQATAMYGYMHHQSPYAAVSTVPNYWGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.131156 | 2.209033 | 11.0734915 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0157000 | RBH | 0.000000 | 0.000000 | 2.348223 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06080 | RBH | 0.000000 | 0.142089 | 0.961763 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0157000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003830 | RBH | 0.0 | 0.0 | 1.621095 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004070 | RBH | 0.0 | 2.387719 | 0.788714 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004080 | RBH | 0.0 | 8.707753 | 5.512543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003900 | RBH | 0.045539 | 0.848880 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004090 | RBH | 0.0 | 40.495453 | 4.489267 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0047700 | RBH | 0.4119515 | 0.4915425 | 0.2542965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004080 | RBH | 0.000000 | 2.115240 | 0.971333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0054100 | RBH | 1.5284275 | 0.491958 | 8.7062555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003860 | RBH | 0.0 | 0.060264 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004080 | RBH | 0.215095 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004090 | RBH | 0.000000 | 22.185570 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004040 | RBH | 0.0 | 0.0 | 1.456601 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004000 | RBH | 0.0 | 19.820532 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003920 | RBH | 0.086716 | 21.891916 | 3.311164 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004130 | RBH | 0.000000 | 0.0 | 3.229071 |
| Os XI: R9311 | R9311 | AGIS | R9311C12g38484 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_12g0044200 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_12g0044200 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0043700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0043800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223650200.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1237209000.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_030913 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1233558200.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1235522000.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1226829200.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232244000.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231323400.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1224989200.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1222182600.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1218374200.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1227085000.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1235454200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1223354800.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233235400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1218930600.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223271600.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1224400400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1231530600.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1220973000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1223003800.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1244837600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1231058600.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226417000.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221331000.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1226953600.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1229273200.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1231684000.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1230599400.01 | RBH | None | None | None |
