Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0047700 | OGI:11008440 | 47/50 | Minghui 63 | MH63RS3 | HZAU | Chr11:2645669-2647804 | ||||||||
| Gene Symbol | RAP2.8,OsRAP2.8 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | AACGTAATTTCTTTACTGCTTGTCGTTTGCGGGAGTTTTCTTTAGTCATACTATTAACATCATAGTGATTTATTCAGACAAATTACCATGTAAGTCATTTCTAAAAAGTTGGAATAAATTGCACATGCACTCCTTAATTTCTTACACAGTGTAATCGGTGAACCTATTGGATTGCAACAAATGGAAGCATTGCATAATTGCATCTGGTCCATCAACAATTGATTGCATCAGGTCAAGCACAGTAGAAGAGGTGAAATGGGGATAAAGTTATGTTTCCTGAGGAGGCAGGAGTGGATACATCAGCTTCAGGGTTTGTTCTTGGACCCACTATACAGACAGATGACACATACTGACATACATACAGCTCTCTGCCTGTCTCTTCAATTCCCCTCTCCTTTTCAACTTGATGTTTCCTGAAACCTCCCCATCCATGTCTGCTGCCAGGGGCCCATACAGTAAGTAGGGTTTCTGGAAGCCAAGATGAAGAAGAAAATAACCTAGAAAAAAGGCACTATGGGGATGGAAGGAATATGCATTTGCCCGGGAAACAAGGGAGTTCCCCCCCCACTTCCTTCCTTGTCCTTCCACAAGTCACAATTTAAACCTGTCACTGAATGCAGAGCAGTAGCAACTAGTTCTTCCACTGTTGCTTGCTAGGACTTATGAATTATGATCATGCAGGCATGGCCTCAGATCAGATCTCATAGTCAATCTTCTTATGAATTGCCCCTGTCATGTTAAGTTGTAGTTCATGGATTAGAGAAATGTTCTTGATGCTTATAGCTAAGTAATCACCTCAATTTAGTGGTGTTTGAAGTTAACACTAACCAGTAACTGGGTACTGCAGACATGGCAGCATAGGAGCTCTGCTGGTGCATGTAGCCGTACATTGTTGCCGCTGCCGTGGTGTCTGCCTCCGGCTCTGGCCCGCAGTCGAGGTTGACGCCGAACAGCCTGAGCCGCCTCGATGGCGCCGAGCCTGCACTGAAGCTTGGGCTGTCCGTGTCGCGCGGAGACTCGTCTACAGTTTGGTCATCAGAAATGGTATGAGCAAGCAAAGCTCGAGGTATGAAATGTTATGCTGTTCATGTTAATTTTGTTTATGATCATCAGTTGCTTCGTCTTCGTTTCTTTACCTGCATGGTGCATGTCCCCGTGATCATGATCTGCTGCGCGGCGGTAGGCGTAGGAGTTGGCTGGGCTGGTAGGGTATGAGCCGCCGCCCGACGTGCTGTAACACATTGGGCTCCACGGCTGCTGCTCGCCGGCGTTCTGTGCAGCCGGGGCGACGCGCACGGCGGGCGGCGGTGCGGGTGTTTGCGCGGCGGCGGCGTCGCCGCGGCGCCTGCAGCCGATGAAGAGACGGTCGCCGACGCCGAAGGAGCCGCGCACCCTCTCGAAGTGCACGACGTCGCCGGCGTCGAGGCGCTTCTCCTTGACGTAGCGGCTCCAGCCCTTGGTGAGCACGTAGCTCTGGCTGCTCGTCCAGTAGGAGTACCTGAACCGCCACGGCGCGCCGGCCTCGTCCTCGAACGACAGGATCAGGCCCTTGTCGGCGGCGTCGCCGGCACCGAGGGGGAAGTACCTCTCGGCGTGCTGCTTGGGGATCACCAGCCGGTTCAGCTTCCCCACGTCACTGGGCGTCAGGGGCTTCTCAAACATGTGCTCCTTCTCGTAGTGGTGGTGGTAGTGGAAGTTGGCGTACATGGCCACACCCCATGGCCAGGACTGGGGTTGCTCCTGGGAGAAGAGAGGGTGGTTCATTGCCATTTCTGCTAGCTTACTTCTCTTTTGTGGCAAAAGCTTTTGCTGCTAGTGCTGGAGAGGGATAGCAGGGATGGTGTGCGGTGTAGAGAACAATGCAGATGTCATGGCCACGCATTTATAGCCTACCAAGGAGAACTTTGGGGGTGTGTCCACATAATAATGTATTACTATTTCCTTGGTACATGACATGAGGGGGGGCTTGGTCCATTTTAACCTAGGTAGACAGGAAGAATCAAAGTGAAGCGCATCAAAGATGCTGAGGTTAGAATATGTAGTTTCATTCAGTGTAGCTGCTGCTGATGAGGAATGATCAGATACTCAGATAGTGGCGCTTCAAAGTTGGTGCCTGGCCATTGTGGCCTAATCACA
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| CDS seq | MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGDAAAAQTPAPPPAVRVAPAAQNAGEQQPWSPMCYSTSGGGSYPTSPANSYAYRRAADHDHGDMHHADESPRDTDSPSFSAGSAPSRRLRLFGVNLDCGPEPEADTTAAATMYGYMHQQSSYAAMSAVPSYWGNS |
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| Protein seq | MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGDAAAAQTPAPPPAVRVAPAAQNAGEQQPWSPMCYSTSGGGSYPTSPANSYAYRRAADHDHGDMHHADESPRDTDSPSFSAGSAPSRRLRLFGVNLDCGPEPEADTTAAATMYGYMHQQSSYAAMSAVPSYWGNS |
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| Function | B3 domain-containing protein Os11g0156000 [UniProtKB/Swiss-Prot:Q53QI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0047700 | OsMH63_11T0047700.1 | Chr11 | 2645669 | 2647804 | - | maker | ||
| CDS seq | ATGGCAATGAACCACCCTCTCTTCTCCCAGGAGCAACCCCAGTCCTGGCCATGGGGTGTGGCCATGTACGCCAACTTCCACTACCACCACCACTACGAGAAGGAGCACATGTTTGAGAAGCCCCTGACGCCCAGTGACGTGGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAGGTACTTCCCCCTCGGTGCCGGCGACGCCGCCGACAAGGGCCTGATCCTGTCGTTCGAGGACGAGGCCGGCGCGCCGTGGCGGTTCAGGTACTCCTACTGGACGAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTACGTCAAGGAGAAGCGCCTCGACGCCGGCGACGTCGTGCACTTCGAGAGGGTGCGCGGCTCCTTCGGCGTCGGCGACCGTCTCTTCATCGGCTGCAGGCGCCGCGGCGACGCCGCCGCCGCGCAAACACCCGCACCGCCGCCCGCCGTGCGCGTCGCCCCGGCTGCACAGAACGCCGGCGAGCAGCAGCCGTGGAGCCCAATGTGTTACAGCACGTCGGGCGGCGGCTCATACCCTACCAGCCCAGCCAACTCCTACGCCTACCGCCGCGCAGCAGATCATGATCACGGGGACATGCACCATGCAGACGAGTCTCCGCGCGACACGGACAGCCCAAGCTTCAGTGCAGGCTCGGCGCCATCGAGGCGGCTCAGGCTGTTCGGCGTCAACCTCGACTGCGGGCCAGAGCCGGAGGCAGACACCACGGCAGCGGCAACAATGTACGGCTACATGCACCAGCAGAGCTCCTATGCTGCCATGTCTGCAGTACCCAGTTACTGGGGCAATTCATAA
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| Protein seq | MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGDAAAAQTPAPPPAVRVAPAAQNAGEQQPWSPMCYSTSGGGSYPTSPANSYAYRRAADHDHGDMHHADESPRDTDSPSFSAGSAPSRRLRLFGVNLDCGPEPEADTTAAATMYGYMHQQSSYAAMSAVPSYWGNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.4119515 | 0.4915425 | 0.2542965 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0156000 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05740 | RBH | 0.0 | 0.0 | 0.294456 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0156000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003840 | RBH | 0.0 | 0.0 | 0.963737 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003820 | RBH | 0.0 | 0.0 | 1.207609 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003770 | RBH | 0.0 | 0.132670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003740 | RBH | 0.0 | 16.191761 | 0.690750 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0049600 | RBH | 1.131156 | 2.209033 | 11.0734915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003830 | RBH | 0.0 | 0.433311 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003760 | RBH | 0.0 | 0.0 | 0.882349 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003860 | RBH | 0.0 | 0.838663 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003840 | RBH | 0.054915 | 8.494149 | 1.082498 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003820 | RBH | 0.0 | 4.382546 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C11g35786 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0041100 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0041600 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1120564600.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1134133200.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_028096 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131013200.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1132615800.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1124207600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1128985000.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1128704200.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1121638400.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120451200.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1116854400.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1124516000.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1132795800.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1121895400.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1129870800.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1118194000.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1120196400.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1121247400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1128567200.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1119443000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1122038800.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1141454600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1128400400.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1123793800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1118773600.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1124326400.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1126613200.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1129196000.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1127290400.01 | RBH | None | None | None |
