Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_07G0249900 | OGI:07042180 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr07:15585472-15587388 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | CACGAGTACAGCCGATGCCCTATAAATAGCCGCCACCGGAGCACAACAGATATCATATCAAAACACAGCAGAGATCGATAGATCTCTTCTGAAGTCCAAAAAAAACTTCAGTCTAGCTGCACACTAGTTAGCAAGTTACTTAGCGTTCAACTTCCAAAGAAGACAGTAGCTAGCTAGTTTAATCAAATCCAAGCTGCAGGATGTCTTCTGCTGGGTCACGTAGCTCGTCCCGCAACAGCAACATGGCGTCAGAGTGGAGCAAAGAGGAGAACAAGCTGTTCGAGCAGGCCATTGCCTACTACGGCGAGGGCGCGCCTGATCTCTGGCACAAGGTGTCCCGCGCCATGGGGGGCACCAAGACAGCCGACGAGGTGCGCCGCCACTTCGAGATCCTCGTGGACGATATCAAGCTGATTGAGGCAAGGCGAGTCCCGTTCCCCAAGTACAATACACAGGGAGCATGGAACTGACCGACTGAGGTAATATAATTAACTACTCATCCTGATTCAATGCTCTCACGTCCAGTAATAATAACCGCGTGCTGCTAATTAACTTGCTATAGCTCTTCAAAGGGAGTAGTCAGCACGTGTTGTGATAAGTTTAGAATCCTGCTGCTTAGCAACACAATCTGCAGTTGCAATCTAGCTTAATTGTAAGCTGATAGCTACTGTAACATCTCATAAGAACACATATGCAGGGAGCATATTAGATGTCAGCCATGGAAATCATGCCCTAGATGGTTGAACTTGAGCACTATAAGCTAGGGGTTAGTCAGTTGTCGTTTTCTTTGTTGTTCTAATTTCCAAATGCACTGCAACATGAGAGTATCTGTACTTTCTGTAACAGATAAATCTGGTGAAACTAACAGCTAGCTCATAATTTGAGCCTGTGGCAAACCATCATGCACACAAAATTAGCATGCAGTTCTACGCACTATAGTATATATGCACCATTTTGTGATTTGTTGGTTTGCACATAGGCCGGTATAGGCACACGAGCTAGCCCTAATTTGGATATATAGTGACGGTTTTTCCCCTAATGCCAATTATTCACGTGTGATCTACAACCAGAAGAATAATTCTCTGATACCAAAGAAAAGAAAGTTTGAATCATGCAGTCTAAGCACCTTGAGCAGTACGTTGTGCTTAAATCAGTTCCAGACTAGCTAACAGCCAACAAATGCTTTAAACATCTCTTTTTCATGTCAGTTCATCTGGCAAATTAAAAGGTGATTTCTGTCTTTTTAAGAGGCACAAGTGTGATGTGTCCATAGGAAAAGGCAATTTATTCAAAGTTATCCTGTACTCTCTTGGAAAGGGGACACAACCATTGTACGTAACCCGAAAAGAGGGAGCTATATATGCGTACCTCATTCTTCTCAAAATAATTTAATTTGTACTAAATAGATAAGTAACCTCAATATACCACACCTAGCTAGCATGCCTACATAAAATGTAACATAATGGTGAATTGGTGACCTTAAATAGATCTACTTTTTTTTATCACTGCTAAGATAAACTCATGGTACATATTTCCAATTTATTTTCCAGGGGTGGAAGCATCTGAGGTTCCAGCAAGGAAATATCTCCAATATAAACTATATTCCTTCCTGTGGCTAGTTGTTGAAGGAAAGCATATTGATATATTGTTACTGTGTTAAGAAGATTGTGGTCGATTGCTTGGTTATAAATAAAAGAAGAAAGGGCTTGTCTGTATATACTTTTAGGTTGTAAAGCAAATCAGTGTTGATCTTGCAAAAAAACTAGCCTGCATTTGGCATTGTGTGTGGTTTTGAACATTCCAGCTATACTATATATGTAGTAAACATCAGTGATGTAAGACTTCTGTACTCGCGTGCTAGTGATTATAAAGTTGTGGTTACTAGAATCTCACATGCTCAATCGACCAACTGGTTTC
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| CDS seq | ATGTCTTCTGCTGGGTCACGTAGCTCGTCCCGCAACAGCAACATGGCGTCAGAGTGGAGCAAAGAGGAGAACAAGCTGTTCGAGCAGGCCATTGCCTACTACGGCGAGGGCGCGCCTGATCTCTGGCACAAGGTGTCCCGCGCCATGGGGGGCACCAAGACAGCCGACGAGGTGCGCCGCCACTTCGAGATCCTCGTGGACGATATCAAGCTGATTGAGGCAAGGCGAGTCCCGTTCCCCAAGTACAATACACAGGGAGCATGGAACTGA |
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| Protein seq | MSSAGSRSSSRNSNMASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRRHFEILVDDIKLIEARRVPFPKYNTQGAWN |
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| Function | Protein RADIALIS-like 3 [UniProtKB/Swiss-Prot:Q6NNN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_07G0249900 | OsMH63_07T0249900.1 | Chr07 | 15585472 | 15587388 | + | maker | ||
| CDS seq | ATGTCTTCTGCTGGGTCACGTAGCTCGTCCCGCAACAGCAACATGGCGTCAGAGTGGAGCAAAGAGGAGAACAAGCTGTTCGAGCAGGCCATTGCCTACTACGGCGAGGGCGCGCCTGATCTCTGGCACAAGGTGTCCCGCGCCATGGGGGGCACCAAGACAGCCGACGAGGTGCGCCGCCACTTCGAGATCCTCGTGGACGATATCAAGCTGATTGAGGCAAGGCGAGTCCCGTTCCCCAAGTACAATACACAGGGAGCATGGAACTGA
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| Protein seq | MSSAGSRSSSRNSNMASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRRHFEILVDDIKLIEARRVPFPKYNTQGAWN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0625335 | 0.0143705 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0443500 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g26150 | RBH | 0.244575 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0443500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012940 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0012780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0012740 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0012670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0012590 | RBH | 1.379605 | 0.0 | 3.247875 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0450900 | SBH | 0.3286025 | 0.009619 | 0.0150105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0253800 | RBH | 0.2114265 | 0 | 0.014322 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0012590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0012630 | RBH | 0.0 | 4.326337 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0012580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0012840 | RBH | 0.0 | 0.0 | 0.331714 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0012620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G012620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0012450 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C07g26137 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_07g0150900 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_07g0155800 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_07g0153500 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_07g0157500 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0712026900.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0725173700.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_025887 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0722391900.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0724281500.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0715983900.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0718793700.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0720192500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0715920300.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0713332500.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0711944100.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0715941300.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0724114700.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0716306700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0719171100.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0714342300.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0712071300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0712061300.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0718475500.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0714178700.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0715116700.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0730724300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0719898100.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0715366300.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0711993900.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0717087100.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0717515700.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0720613300.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0716540500.01 | RBH | None | None | None |
