Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0450900 | OGI:01082490 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr01:28862485-28864418 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | GTTGGAACTTGGAAGGGACATTGAAGCATTCATAGTTCAAATGTAGACATCACAAATTCAAAATTCTGAAACCAGTTGGTCCAATGAGGAAGTGAGATTCTAGCAAGCACAACTTTATAATCACTAGCACACAAGTACAGAAGTCTTACATCACTGATGTTTACTACATAATTTAGCTGGAATGTTTAACAACCACACACAATGCCAAATGCAGGCTAGTTTCTGCAAGATCGACACTGATTTGCTTTACAACCTAGAGTATGTACAAACAAGTCTTTTCTTCTTTTATTTATAACCAAGCGACCACAATCTTCTTAGGCAATAACAATATCAATATACTTCCTTGATTCCTTCAGTAACTTAGCCACAGCTAGCAAGGAATATAATTTATATTGGAATTTTTTTCCTGTTGTCTGGAACCTCAGATGCTTCCACCCCTGGAAAATAAATTGGAAAGATGAACTGTGAGTTTATCTTAGCAGTGATAAAAAATAGATATATTTCAGGGCGCCATAATGTTGCATTTGAATAGGAGATATTCAGACGCCGTTTTATCTTAATTTGCTTTCTATGTAGGCGTTCTAGGTGTGGTTTATTGGGTCTCAGAGATTACTTATCTATCTATAAAATATATTTTGAGAAGAATGGTGTATGCATAGCTCCCTCTTCTAGGGTTACAATGGTTGTGCTCCCTTCCGAGAGAGCATAGAATAACTTTGAATAAATTGCCTTTTCCTATAGACACATCACACTTGTGCCTCTTAAAAAGAAGGCAATCACCTTTTAATTTGCCAGATGAACTGACATGAAAAAGAGATGTTTAAAGCACCTGTCGGCTGCTAGTCTGGAACTGAATTAAGCACAACTGCTCAAGGGGTAAGACTGCAAGATTCAAACTTTCTTTTGTTTGGTAGCAGAGAGATTATTCTTCTGGTGCTAGATCCCACGTGAATAATTGTAACTAGGGGACAAACCATCAGTACATAAATTAGGGCTAACTCCTGTGCCTACCAGCCTATGTGCAAACCAATAATCACAAAATGGTGCATCGTGCATACCACTGCATGCAAATTATGTGTGCATGATGGCTTGTCACAGGCTCAAGTTATGAGCTCTTGGTTTTGCCAGATTTATCTGTTACAGTACAGTGCAGATACTCTGATGTTGCACTGCATCTGAAAAGTATAACTGCAAATGAAACGACAACTGACTACCCTAGCAGTGTTCAAGTTCAATCATCTAGGGCATGATTATCATGGCTGACATCTAATGATCCCTGCATATGTGTTCGTGTGAGATGTGACAGTAGCTATCAGCTTACAAGCTAGCCTGCAACTGAAGATTGTTTTGCTAAGCAGCCGATTCTGAACTTATCAGAACACGTGAGATGACTAGCTTTGAAGAGTCATAGCAAGGTAGCAACACGTGTTTATTACTAGACGCGAGAGGATTGAATTAGGTTGAATATTTCCCAGCTGGTTACCTATCAGTTCCATGCTCCCTGTGTATTGTACTTGGGGAACGGGACTCTTCTTGCCTCTATCAGCTTGAGGTCGTCCTCGAGGATCTCATAGTGGCGGCGCACCTCATCGGCTGTCTTGGTGCCTCCCATGGCGCGAGACACCTTGTGAAAGAGGTCAGGCGCACCCTCGCCGTAGTAGGCAAGAGCCTCCTCGAACAGCTTGTTCTCCTTTTTGCTCCACTCTGAGTCCATGTTGACACTGTTGCTGTTGCGGGAGGAGCTGCTTGACCTAGAAGACATCCTTGGATTGGACTACTGTCTTTCTTTGGAAGTGAACTGGCTAGCTAGCTAGTGTGCAGCTAGACTGAAGTTTTTTTCTCTTCAGAAGAGATTTCTGCTGTTTTGATATGATATCTGTTCTGCTTGGGTGGCAGCTATTTATAGGCCATTGGGGCGCCGGCTGTACTCGTGT
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| CDS seq | ATGTCTTCTAGGTCAAGCAGCTCCTCCCGCAACAGCAACAGTGTCAACATGGACTCAGAGTGGAGCAAAAAGGAGAACAAGCTGTTCGAGGAGGCTCTTGCCTACTACGGCGAGGGTGCGCCTGACCTCTTTCACAAGGTGTCTCGCGCCATGGGAGGCACCAAGACAGCCGATGAGGTGCGCCGCCACTATGAGATCCTCGAGGACGACCTCAAGCTGATAGAGGCAAGAAGAGTCCCGTTCCCCAAGTACAATACACAGGGAGCATGGAACTGA |
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| Protein seq | MSSRSSSSSRNSNSVNMDSEWSKKENKLFEEALAYYGEGAPDLFHKVSRAMGGTKTADEVRRHYEILEDDLKLIEARRVPFPKYNTQGAWN |
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| Function | Protein RADIALIS-like 3 [UniProtKB/Swiss-Prot:Q6NNN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0450900 | OsMH63_01T0450900-mRNA-1 | Chr01 | 28862485 | 28864418 | - | maker | ||
| CDS seq | ATGTCTTCTAGGTCAAGCAGCTCCTCCCGCAACAGCAACAGTGTCAACATGGACTCAGAGTGGAGCAAAAAGGAGAACAAGCTGTTCGAGGAGGCTCTTGCCTACTACGGCGAGGGTGCGCCTGACCTCTTTCACAAGGTGTCTCGCGCCATGGGAGGCACCAAGACAGCCGATGAGGTGCGCCGCCACTATGAGATCCTCGAGGACGACCTCAAGCTGATAGAGGCAAGAAGAGTCCCGTTCCCCAAGTACAATACACAGGGAGCATGGAACTGA
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| Protein seq | MSSRSSSSSRNSNSVNMDSEWSKKENKLFEEALAYYGEGAPDLFHKVSRAMGGTKTADEVRRHYEILEDDLKLIEARRVPFPKYNTQGAWN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.3286025 | 0.009619 | 0.0150105 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0663051 | RBH | 1.409729 | 2.068077 | 0.557928 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47370 | RBH | 1.154068 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0663051 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028090 | RBH | 0.0 | 0.0 | 5.462671 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027620 | RBH | 0.0 | 0.0 | 4.342742 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028060 | RBH | 0.000000 | 0.0 | 8.204803 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027050 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0440100 | RBH | 2.097439 | 4.427147 | 1.0185095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026750 | RBH | 0.0 | 0.0 | 0.768403 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0439700 | RBH | 0.2667835 | 0 | 0.015818 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026920 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027320 | RBH | 0.0 | 0.0 | 0.709429 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027120 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027260 | RBH | 0.0 | 0.0 | 7.419146 |
| Os XI: R9311 | R9311 | AGIS | R9311C01g03066 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_01g0321800 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_01g0326400 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_01g0309700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_01g0331000 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0101008200.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0103704400.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_002972 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0103427800.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0103467600.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0101190400.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0101009200.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0100619200.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0101115400.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0101179800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0101017000.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0100983400.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0103372400.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0100999000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0100998000.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0100739400.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0101024600.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0101001400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0101019200.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0101702400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0101983400.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0105645000.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0101029200.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0100979200.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0100990200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0101014000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0101016600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0100993200.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0101001600.01 | RBH | None | None | None |
