Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0440100 | OGI:05076370 | 23/50 | Minghui 63 | MH63RS3 | HZAU | Chr05:29343626-29343883 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | ATGTCTGGGTCCCGGAGCTCCTCCCCCAACTCGAAGTCCGAGTGGAGCAGGAAGGAGAACAAGATGTTCGAGGAGGCGCTCGCCTACTACGGCGAGGACACGCCCAACCGGTGGGACAAGGTGGCCAGCGCCATGGGAGGCATCAAGTCCGCTGAGGAGATCCGCTGCCACTACGAAGACCTCACCGATGACGTCAAGACGATCGAGTCCGGGCGAGTGCAGTTCCCCAAGTACAAGACGCAGGGATACTGGACCTGA |
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| CDS seq | ATGTCTGGGTCCCGGAGCTCCTCCCCCAACTCGAAGTCCGAGTGGAGCAGGAAGGAGAACAAGATGTTCGAGGAGGCGCTCGCCTACTACGGCGAGGACACGCCCAACCGGTGGGACAAGGTGGCCAGCGCCATGGGAGGCATCAAGTCCGCTGAGGAGATCCGCTGCCACTACGAAGACCTCACCGATGACGTCAAGACGATCGAGTCCGGGCGAGTGCAGTTCCCCAAGTACAAGACGCAGGGATACTGGACCTGA |
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| Protein seq | MSGSRSSSPNSKSEWSRKENKMFEEALAYYGEDTPNRWDKVASAMGGIKSAEEIRCHYEDLTDDVKTIESGRVQFPKYKTQGYWT |
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| Function | Protein RADIALIS-like 3 [UniProtKB/Swiss-Prot:Q6NNN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0440100 | OsMH63_05T0440100.1 | Chr05 | 29343626 | 29343883 | + | maker | ||
| CDS seq | ATGTCTGGGTCCCGGAGCTCCTCCCCCAACTCGAAGTCCGAGTGGAGCAGGAAGGAGAACAAGATGTTCGAGGAGGCGCTCGCCTACTACGGCGAGGACACGCCCAACCGGTGGGACAAGGTGGCCAGCGCCATGGGAGGCATCAAGTCCGCTGAGGAGATCCGCTGCCACTACGAAGACCTCACCGATGACGTCAAGACGATCGAGTCCGGGCGAGTGCAGTTCCCCAAGTACAAGACGCAGGGATACTGGACCTGA
More
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| Protein seq | MSGSRSSSPNSKSEWSRKENKMFEEALAYYGEDTPNRWDKVASAMGGIKSAEEIRCHYEDLTDDVKTIESGRVQFPKYKTQGYWT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.097439 | 4.427147 | 1.0185095 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0567600 | RBH | 2.194983 | 1.380934 | 4.464252 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49240 | RBH | 1.518511 | 0.942464 | 1.175624 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0567600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027300 | RBH | 0.000000 | 0.000000 | 1.825407 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027090 | RBH | 0.000000 | 0.0 | 2.681306 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027080 | RBH | 0.000000 | 0.0 | 17.134268 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027140 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027070 | RBH | 0.000000 | 0.000000 | 1.739625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0450900 | RBH | 0.3286025 | 0.009619 | 0.0150105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026730 | RBH | 0.000000 | 0.000000 | 1.739074 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0452000 | RBH | 1.5449405 | 5.0255505 | 6.750518 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0026910 | RBH | 0.936232 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026770 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026970 | RBH | 3.349927 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027020 | RBH | 0.650934 | 0.0 | 2.067327 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027040 | RBH | 0.087586 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026500 | RBH | 0.000000 | 0.000000 | 2.432585 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027040 | RBH | 2.547159 | 0.000000 | 7.939994 |
| Os XI: R9311 | R9311 | AGIS | R9311C05g21141 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_05g0317700 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_05g0318400 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_05g0314400 | SBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_05g0322900 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0509481600.01 | SBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0520755200.01 | SBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_024178 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0517907600.01 | SBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0519876200.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0511671600.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0513386000.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0515642000.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0512928000.01 | SBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0510490800.01 | SBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0509419200.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0512684400.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0519636400.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0511824200.01 | SBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0513534200.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0511604200.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0509492000.01 | SBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0509503400.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0513310800.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0511359300.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0511673900.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0525648600.01 | SBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0515441200.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0510995200.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0509442800.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0512642400.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0512971000.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0516284000.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0511383600.01 | SBH | None | None | None |
