Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0448000 | OGI:05077730 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr05:29791900-29794412 | ||||||||
| Gene Symbol | OsC3H39,C3H39 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | ATGGCGGCCTATATATGCGCAGGTGCAGAGCACTTGCATTCTTCAGATTGCCAGAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCCCTTCTCCCCCAAATCATCCTTCCCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAGAGGTGTGCTGCTTGATCCAATCTACACTTGGGGTTAACCGCTTGGTGATTTAGTTGCGCTTGCGCCACTAGTTAGTTAATCAGTGGATAGTTGGGGGTTGGGCGTGCTGTTCTGCTCCACTTGGGATGCGAGTTTGATCGATTTTGCTTTTTTATTTTTTAAGCTTGCTGTTTCTCGTGCTGCATTGGTGAGAAACTAGTTTTTGTTCGTGGATTCAGCGTTTTCTTCGCGATCAGGCGTCCGGTTCCGTTTTTTCTTAGCGTTTTTGTCCCGTTTTTTGGTGTGGAATCAGTCTGGTTCTCGATTTAGAAACTAGTTGATTACTTGTTCTCACTGTTACAGTGGATGAGATCGCGTCTTCGAATGCGATTTTTGATTGCTTCCATGATACGATTTTCCTGTTCTCAGAGCTAGATTCTGTGGAAAGCATCTCTACTTTTTTTTTATTTTGGTTCGCTTCGTGTGGAGAATTTAGTGTGATTTTTGTTGGAATTTTCATTGACATTTTGATCCGTTTACTTGCAGGGATTAGTTGTTCGCGGAGATCGCCGCTATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGGTGAGACCAAATCCCCCAATTCCTCCATTGTGTTGTGTCTGGCTCCCACTCTTGCAGCGCACTGACTCCTGTGCTGAATCCAAAATCCCAATCCTAACTAGTACGATGTTCTTGATGCGACAATGCAAGCAGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGATCATACGTGTCAGTCCATCACCGATCGCCACTCTCTCACTCCCTCCTAATCTCCTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGTATACTATTTAGTTGCACAAAGCAAATGAGAACTGAATTATACAATTAGCACACAGGCGAAATGTGAATACTAGAGAGTTATAGCTATTAAGTTGTGGTCAGATATGTGAGTTATTACATTGGGGGTTATTTGTCCTATGGTTCATATTGTTATATAGGTTATTATGATCTTGTTTCCTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCATGTAAGTAAGGCTGTTATTTGGATATCTGAATTATGTATGGAACACTTGTACGCTATGAAAGCGCCTGAAGGCTGTTATTTGCAATTTGATTGATGTGTTGGAACACTTGTATGGTGAGGGTTCACTGTTCAGGCATCTTCATTCTTCAGTTGTAATGTTTTATGAGCAGTTGAAGTAATGAATTATACTTTTTGGTGAACTTGAATTGAAGCATTGGTGCCATTTTGTCTATGCTCATTCATGTAATGAATTATATACTTTTGATTTGATGAACTTGAATTGAAGCCTG
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| CDS seq | ATGGCGGCCTATATATGCGCAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCCCTTCTCCCCCAAATCATCCTTCCCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAGAGTTGTTCGCGGAGATCGCCGCTATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGA
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| Protein seq | MAAYICAEIQRQSREPHDTLLLLSLSPSPPNHPSQNQRLRVVSANRELFAEIAAMQEALLPPAHPGRFYSDFGPKPFGSGDQRLSSPNLLTNGGDLFYGCYSPFSPTRVLSPPPPRRAASFSHCSSSSDSVVDDGDGAGAAAATEHRLHLAHLALQYQEMANRFELCLSHLADAADEAAALRQENAELRVANNDLACRIAKFGGRQSSAIALAGDLRRLRLPKEQTVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRSTGYQKLNQGGKHRVSKPVNVGSQRVFVGIDGAEGGEHKVGVKKEEPPMGGLEFEVYNQGMFKTELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRHSITPADRFSFGH |
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| Function | Zinc finger CCCH domain-containing protein 39 [UniProtKB/Swiss-Prot:Q6L5G1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0448000 | OsMH63_05T0448000-mRNA-1 | Chr05 | 29791900 | 29794412 | + | maker | ||
| CDS seq | ATGGCGGCCTATATATGCGCAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCCCTTCTCCCCCAAATCATCCTTCCCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAGAGTTGTTCGCGGAGATCGCCGCTATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGA
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| Protein seq | MAAYICAEIQRQSREPHDTLLLLSLSPSPPNHPSQNQRLRVVSANRELFAEIAAMQEALLPPAHPGRFYSDFGPKPFGSGDQRLSSPNLLTNGGDLFYGCYSPFSPTRVLSPPPPRRAASFSHCSSSSDSVVDDGDGAGAAAATEHRLHLAHLALQYQEMANRFELCLSHLADAADEAAALRQENAELRVANNDLACRIAKFGGRQSSAIALAGDLRRLRLPKEQTVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRSTGYQKLNQGGKHRVSKPVNVGSQRVFVGIDGAEGGEHKVGVKKEEPPMGGLEFEVYNQGMFKTELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRHSITPADRFSFGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.359675 | 1.4027985 | 0.354657 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0576300 | RBH | 0.151925 | 0.101310 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50080 | RBH | 0.101915 | 0.080907 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0576300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028020 | RBH | 0.236435 | 6.228842 | 2.729902 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027820 | RBH | 0.0 | 1.978797 | 0.198532 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027830 | RBH | 0.262070 | 4.152845 | 3.914080 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027870 | RBH | 0.0 | 0.036706 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027770 | RBH | 0.0 | 0.0 | 3.276392 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0436500 | RBH | 1.8194885 | 3.5103895 | 0.0730645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027460 | RBH | 0.0 | 0.249530 | 0.153385 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0461000 | RBH | 0.4415455 | 0.952966 | 1.399174 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027490 | RBH | 0.0 | 1.879926 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027740 | RBH | 0.0 | 0.281686 | 0.143254 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027750 | RBH | 0.0 | 1.725787 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027270 | RBH | 0.0 | 0.0 | 1.321575 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027730 | RBH | 0.0 | 0.0 | 1.953738 |
| Os XI: R9311 | R9311 | AGIS | R9311C05g21219 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_05g0325600 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_05g0325600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_05g0311800 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_05g0330800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0509472500.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0520743500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_024261 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0517895300.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0519861900.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0511657900.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0513372300.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0515628500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0512911900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0510480500.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0509409700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0512670500.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0519624100.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0511814900.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0513520700.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0511598100.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0509482900.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0509494300.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0513297300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0511390900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0511710700.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0525632300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0515429100.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0510982900.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0509432900.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0512630300.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0512958900.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0516269700.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0511369700.01 | RBH | None | None | None |
