Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0018700 | OGI:03003140 | 49/50 | Minghui 63 | MH63RS3 | HZAU | Chr03:1169300-1170226 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | ATGGAGTTCATCACGCCAATCGTGAGGCCGGCATCGGCGGCGGCGGGCGGCGGCGAGGTGCAGGAGAGTGGTGGGAGGAGCTTGGCGGCGGTGGAGAAGGAGCACATGTTCGACAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTGGTGATCCCGAAGCAGCACGCGGAGAAGTACTTCCCGCTGGACGCGGCGTCCAACGAGAAGGGGCTCCTGCTCAGCTTCGAGGACCGCACGGGGAAGCCATGGCGGTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCGGCCGCGGCGTCGGCGAGGCCGCGCGCGGGAGGCTCTTCATCGACTGGCGCCGCCGCCCCGACGTCGTCGCCGCGCTCCAGCCGCCCACGCACCGCTTCGCCCACCACCTCCCTTCCTCCATCCCCTTCGCTCCCTGGGCGCACCACCACGGACACGGAGCCGCCGCCGCCGCCGCCGGCGCCAGGTTTCTCCTGCCTCCCTCCTCGACTCCCATCTACGACCACCACCGCCGACACGCCCACGCCGTCGGGTACGACGCGTACGCCGCGGCCACCAGCAGGCAGGTGCTGTTCTACCGGCCGTTGCCGCCGCAGCAGCAGCATCATCCCGCGGTGGTTCTGGAGTCGGTGCCGGTGCGCATGACGGCGGGGCACGCGGAGCCGCCGTCGGCTCCGTCGAAGCGAGTTCGGCTGTTCGGGGTGAACCTCGACTGCGCGAATTCCGAACAAGACCACGCCGGCGTGGTCAGGAAGACGGCGCCGCCGCCGCTGCCATCGCCGCCGTCATCATCGTCATCTTCCTCCGGGAAAGCGAGGTGCTCCTTGAACCTTGACTTGTGA
More
|
||||||||||
| CDS seq | MEFITPIVRPASAAAGGGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWRRRPDVVAALQPPTHRFAHHLPSSIPFAPWAHHHGHGAAAAAAGARFLLPPSSTPIYDHHRRHAHAVGYDAYAAATSRQVLFYRPLPPQQQHHPAVVLESVPVRMTAGHAEPPSAPSKRVRLFGVNLDCANSEQDHAGVVRKTAPPPLPSPPSSSSSSSGKARCSLNLDL |
||||||||||
| Protein seq | MEFITPIVRPASAAAGGGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWRRRPDVVAALQPPTHRFAHHLPSSIPFAPWAHHHGHGAAAAAAGARFLLPPSSTPIYDHHRRHAHAVGYDAYAAATSRQVLFYRPLPPQQQHHPAVVLESVPVRMTAGHAEPPSAPSKRVRLFGVNLDCANSEQDHAGVVRKTAPPPLPSPPSSSSSSSGKARCSLNLDL |
||||||||||
| Function | B3 domain-containing protein Os03g0120900 [UniProtKB/Swiss-Prot:Q8LMR9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0018700 | OsMH63_03T0018700.1 | Chr03 | 1169300 | 1170226 | + | maker | ||
| CDS seq | ATGGAGTTCATCACGCCAATCGTGAGGCCGGCATCGGCGGCGGCGGGCGGCGGCGAGGTGCAGGAGAGTGGTGGGAGGAGCTTGGCGGCGGTGGAGAAGGAGCACATGTTCGACAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTGGTGATCCCGAAGCAGCACGCGGAGAAGTACTTCCCGCTGGACGCGGCGTCCAACGAGAAGGGGCTCCTGCTCAGCTTCGAGGACCGCACGGGGAAGCCATGGCGGTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCGGCCGCGGCGTCGGCGAGGCCGCGCGCGGGAGGCTCTTCATCGACTGGCGCCGCCGCCCCGACGTCGTCGCCGCGCTCCAGCCGCCCACGCACCGCTTCGCCCACCACCTCCCTTCCTCCATCCCCTTCGCTCCCTGGGCGCACCACCACGGACACGGAGCCGCCGCCGCCGCCGCCGGCGCCAGGTTTCTCCTGCCTCCCTCCTCGACTCCCATCTACGACCACCACCGCCGACACGCCCACGCCGTCGGGTACGACGCGTACGCCGCGGCCACCAGCAGGCAGGTGCTGTTCTACCGGCCGTTGCCGCCGCAGCAGCAGCATCATCCCGCGGTGGTTCTGGAGTCGGTGCCGGTGCGCATGACGGCGGGGCACGCGGAGCCGCCGTCGGCTCCGTCGAAGCGAGTTCGGCTGTTCGGGGTGAACCTCGACTGCGCGAATTCCGAACAAGACCACGCCGGCGTGGTCAGGAAGACGGCGCCGCCGCCGCTGCCATCGCCGCCGTCATCATCGTCATCTTCCTCCGGGAAAGCGAGGTGCTCCTTGAACCTTGACTTGTGA
More
|
|||||||
| Protein seq | MEFITPIVRPASAAAGGGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWRRRPDVVAALQPPTHRFAHHLPSSIPFAPWAHHHGHGAAAAAAGARFLLPPSSTPIYDHHRRHAHAVGYDAYAAATSRQVLFYRPLPPQQQHHPAVVLESVPVRMTAGHAEPPSAPSKRVRLFGVNLDCANSEQDHAGVVRKTAPPPLPSPPSSSSSSSGKARCSLNLDL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.7989885 | 6.2652065 | 3.421096 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0120900 | RBH | 0.0 | 0.331157 | 0.335234 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02900 | RBH | 0.0 | 0.202379 | 0.078411 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0120900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0001690 | RBH | 0.0 | 0.837516 | 0.847599 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0001680 | RBH | 0.0 | 2.154683 | 0.102532 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0001700 | RBH | 0.268824 | 4.481771 | 0.443171 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0001690 | RBH | 0.047990 | 0.125262 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001730 | RBH | 0.0 | 1.161875 | 2.265184 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0345300 | RBH | 0.206656 | 1.07224 | 0.1053275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0001680 | RBH | 0.130223 | 0.181209 | 0.408048 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0018500 | RBH | 1.818051 | 2.7714005 | 3.4827925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001750 | RBH | 0.082886 | 0.152437 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001770 | RBH | 0.245086 | 4.065997 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0001720 | RBH | 0.0 | 8.230976 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0001750 | RBH | 0.124041 | 0.160651 | 0.308812 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0001760 | RBH | 0.049765 | 3.947702 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G001760 | RBH | 0.105507 | 0.0 | 0.034791 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0001600 | RBH | 0.0 | 0.0 | 0.743291 |
| Os XI: R9311 | R9311 | AGIS | R9311C03g10010 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_03g0016500 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_03g0016600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_03g0016900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_03g0016900 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0303866100.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0309850300.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_005473 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0309114500.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0309530100.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0303875700.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0305072700.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0304271300.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0304322700.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0303823500.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0303840900.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0309308100.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0303855100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0303867500.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0302447500.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0303894500.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0303896100.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0303873500.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0305138300.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0304269300.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0312673700.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0305490700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0303800300.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0303837100.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0303879500.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0303863300.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0305652900.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0303910300.01 | RBH | None | None | None |
