Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0454000 | OGI:02078760 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr02:29289266-29292040 | ||||||||
| Gene Symbol | RAV6 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | CCCCTCTTTACAGACTGCCACGGCCATAAAGATCTCGTGGACTGGTATACTGTTCGCGCTCAAGGCCCAGACAATCCAAACTATACGTAATCTGGCCCACTGCCATCAGTTAATTTTCCAGTGTACCCCGCTAATCAGCAACAGAATTATGCGTAATCTGGTCCACCCTGCATCACTTAATTCAGTGTCCCCCGTTAATCAGCAACAGAAAAATTTAAGACATGGAAAACTCAACACCGTACTGGATATGCCAGTAGCATATATATCCCCCATATGCTGCTACTAGTAGCTAGCTCAGTACTACACTCTATACCATGACGTTACTTATACAGATATCATACATCCATGATATATATACATGCAGAAGAGAGCGACAGTACTACTGCCACTGTAGCAGGGGAAAAAGCGGCGGCAAAGAGGGGGAAAAATATATAGAAGAGGAATGTACGTTCACGACGACTTTCACTGTAAATACTGAAATTATGGTGCAGTGAATGGAAGAGAATTTTGAGATCTAACCTGCAATTGTTGCTCTCTGGAGTTGTTTGTTGTCGATCGATGCATGGTTATTAACGCGCCGTCCAAACGTTGGGGTCGAGATCGATGCGATCGATTGGATACAGCATATCGCACACATATGATGTGCAAGCGAAGTGAGGCAGCCAGGCACTGCTTGCTTGCTTGCTTTGTGTTCGTCCATGGATATATGTTCAAATCTTGGCAGATGTTAGGAGAGATTATATAAAGAATTTTGCAGATGTATGTTATCATATGTAGGAAATGGGCTTGTGTTTATGGTAACAAATCATTGGACAGAAGTAATCGAGCAAGAATGGAATGTAATAGAACAAAGCAAAGGAAGAGCTCAAGCTCATCACACGGATTTGGGGAAAACTTTCAAGTTTCCTAATAATTCTCTATATCTTCTCAAACCAACAGAAAAATTCCAATTAAGTGGCCAACAAAACAAAAATGTCAAATCCTAATGCTGTCATCAAATTTCAGGTTATAATGGAATCACAAGAGAAAGTGAGATCGATGTTGCTGCGAGAAGAAGAACAAACCAAATCAAAACAGAAGAAGAAAAAAGAATCGTTGATGAACTTTCCTTTGTTTTTCTCTCTTTAGGTCGCTACAGATCGAGATCCAAGGCCGAATGCGCGTCCCTCTTGGAGGAAGACGACGACGACGGAGACGATGCAGCGGACGACTCGGCGCCATGGTGGTGGTGAGGAGGCAATTCCAGCAGCCGCAGTGTTGGATCCCTCCTCATCCACGCGGGCGTCTGCAATGACAGTGCATTGCCATGATTGCTCGACTCGCCGGCGGCGGCGGCGCCGCCGCCGCCGGCATGCGGGTTGTCGAGGTTCACGCCGAACAGCCTTACGCGCTTCGCGGCCGTCGTGGGGCTCTCGATGACCGGAACCGAGTCGAGCACCACCGGTGAGCCCGCCGCCCTTACACCATCGCCGCTCGGCTGCAGCGTGTAGTGGTGGTGCAGCGGCGACGGCGCGCGCGCCAGCAGTGGTGCTTGCGGAGGAATCCTCGCCGAGCCGAACAGGAGGACCTGCCTCCCCATCGCGGCGGCGGGGTTGAAGGCGCGGAAGTCGAGGCCTTGCCTGAGGCGGTGCTCGTAGAGCGTGGCCGGCGGCGAGGGCGGCACGAAGAATCCCCCTCCGCCGCCGATCCCCCACGGGGCGTAGTGCGACGTGAGCGGCATCGGGAGCGGCAGCCCGCGGGGCAGCCGGAGCGGGTCGCGGGTGTCGGCGCGGCGCTTCCAGTCGATGAAGAGGCGGTGCCGCGCCGCCTCGTCGCCGATGCCGCGGGAGAAGGAGACGGTGTCCCCGGCGTCGAGGCGCTTCTCCTTGACGAAGCGGCTCCACCCCTTGGTCATCACGTAGCTCTGGCTGCTGTTCCAGTAGGAGTAGCGGAACCGCCATGGCTTCCCCGCGCGGTCCTCGAAGTTGAGCAGGAGGCCCTTCTCGTTCGCCGCCGCGTCCAGCGGGAAGTACTTCTCGGCGTACTGCTTCGGGATCACCAGCCGGTTCAGCTTCCCGACGTCGCTCGGCGTCACCACCTTGTCGAACATGTGCTCCTTCTCCACCACCTCCGCTTCTCCGCCGCCGCCGCCGCCGCCGCTCCCAGACGCCCCGGCGCCATCGTCGGAGCGAAAGGGAGTGCTGCTCCCTGACGCAGACGCCGACGCCGACGCGGAAGCCGCGTGATGAGCAGGAGACGACGACGACGACGTGGGCGCAGGCGCGGCTTCGGCCGTGGCCGTCATGAAGGGGATCTCTCGCCTTCCCGCCTCATCCTGCTCCTCGTCCTCCTCTTCTTTAGAAAACCTACTGCTTGTAGTGAACTCCATAGAAAACTATCACTATTTCCTCAAATTCTTGGCTGTATTTCTTGCTCCTCTCTCCCAACTCCTTCTTCTTCTTCCTTCTTCCTCCTCTGCAAGATGTTCGAGGATAGGCACTGTTACAAAGAAGTAAGCTATAGGATACTAGAGAGGGGGATATGATCTACCTATGTATGCGTGTATGTATTGTATTGTTGTTCCTATGAATTCCTATTGATCTCGAGCTGTGTTTGGAGGAAGCAAGCCAAGCTCTAGCTAGGGAGAGGGAGAAGAGCAGAGAGAGGAGGAATCAGAGCGGTTTGCATTGAGTCTTGTGCGCTTCTAAGCTATGGGGATATGGTGGGAAGAGAGAGAGAGAAAGTGACCATGGAATTGGATGTAGATCGGTGGTTCTTACTGGTTATACTACTGAC
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| CDS seq | MEFTTSSRFSKEEEDEEQDEAGRREIPFMTATAEAAPAPTSSSSSPAHHAASASASASASGSSTPFRSDDGAGASGSGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRADTRDPLRLPRGLPLPMPLTSHYAPWGIGGGGGFFVPPSPPATLYEHRLRQGLDFRAFNPAAAMGRQVLLFGSARIPPQAPLLARAPSPLHHHYTLQPSGDGVRAAGSPVVLDSVPVIESPTTAAKRVRLFGVNLDNPHAGGGGAAAAGESSNHGNALSLQTPAWMRRDPTLRLLELPPHHHHGAESSAASSPSSSSSSKRDAHSALDLDL
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| Protein seq | MEFTTSSRFSKEEEDEEQDEAGRREIPFMTATAEAAPAPTSSSSSPAHHAASASASASASGSSTPFRSDDGAGASGSGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRADTRDPLRLPRGLPLPMPLTSHYAPWGIGGGGGFFVPPSPPATLYEHRLRQGLDFRAFNPAAAMGRQVLLFGSARIPPQAPLLARAPSPLHHHYTLQPSGDGVRAAGSPVVLDSVPVIESPTTAAKRVRLFGVNLDNPHAGGGGAAAAGESSNHGNALSLQTPAWMRRDPTLRLLELPPHHHHGAESSAASSPSSSSSSKRDAHSALDLDL |
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| Function | B3 domain-containing protein Os02g0683500 [UniProtKB/Swiss-Prot:Q6EU30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0454000 | OsMH63_02T0454000.1 | Chr02 | 29289266 | 29292040 | - | maker | ||
| CDS seq | ATGGAGTTCACTACAAGCAGTAGGTTTTCTAAAGAAGAGGAGGACGAGGAGCAGGATGAGGCGGGAAGGCGAGAGATCCCCTTCATGACGGCCACGGCCGAAGCCGCGCCTGCGCCCACGTCGTCGTCGTCGTCTCCTGCTCATCACGCGGCTTCCGCGTCGGCGTCGGCGTCTGCGTCAGGGAGCAGCACTCCCTTTCGCTCCGACGATGGCGCCGGGGCGTCTGGGAGCGGCGGCGGCGGCGGCGGCGGAGAAGCGGAGGTGGTGGAGAAGGAGCACATGTTCGACAAGGTGGTGACGCCGAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCGAAGCAGTACGCCGAGAAGTACTTCCCGCTGGACGCGGCGGCGAACGAGAAGGGCCTCCTGCTCAACTTCGAGGACCGCGCGGGGAAGCCATGGCGGTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCTCCCGCGGCATCGGCGACGAGGCGGCGCGGCACCGCCTCTTCATCGACTGGAAGCGCCGCGCCGACACCCGCGACCCGCTCCGGCTGCCCCGCGGGCTGCCGCTCCCGATGCCGCTCACGTCGCACTACGCCCCGTGGGGGATCGGCGGCGGAGGGGGATTCTTCGTGCCGCCCTCGCCGCCGGCCACGCTCTACGAGCACCGCCTCAGGCAAGGCCTCGACTTCCGCGCCTTCAACCCCGCCGCCGCGATGGGGAGGCAGGTCCTCCTGTTCGGCTCGGCGAGGATTCCTCCGCAAGCACCACTGCTGGCGCGCGCGCCGTCGCCGCTGCACCACCACTACACGCTGCAGCCGAGCGGCGATGGTGTAAGGGCGGCGGGCTCACCGGTGGTGCTCGACTCGGTTCCGGTCATCGAGAGCCCCACGACGGCCGCGAAGCGCGTAAGGCTGTTCGGCGTGAACCTCGACAACCCGCATGCCGGCGGCGGCGGCGCCGCCGCCGCCGGCGAGTCGAGCAATCATGGCAATGCACTGTCATTGCAGACGCCCGCGTGGATGAGGAGGGATCCAACACTGCGGCTGCTGGAATTGCCTCCTCACCACCACCATGGCGCCGAGTCGTCCGCTGCATCGTCTCCGTCGTCGTCGTCTTCCTCCAAGAGGGACGCGCATTCGGCCTTGGATCTCGATCTGTAG
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| Protein seq | MEFTTSSRFSKEEEDEEQDEAGRREIPFMTATAEAAPAPTSSSSSPAHHAASASASASASGSSTPFRSDDGAGASGSGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRADTRDPLRLPRGLPLPMPLTSHYAPWGIGGGGGFFVPPSPPATLYEHRLRQGLDFRAFNPAAAMGRQVLLFGSARIPPQAPLLARAPSPLHHHYTLQPSGDGVRAAGSPVVLDSVPVIESPTTAAKRVRLFGVNLDNPHAGGGGAAAAGESSNHGNALSLQTPAWMRRDPTLRLLELPPHHHHGAESSAASSPSSSSSSKRDAHSALDLDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.854802 | 0.7539325 | 1.3799355 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0683500 | RBH | 0.0 | 0.193105 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45850 | RBH | 0.0 | 0.129879 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0683500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029210 | RBH | 0.118165 | 0.0 | 0.656982 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029270 | RBH | 0.0 | 0.0 | 0.264107 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029140 | RBH | 0.185872 | 0.769843 | 0.457251 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028910 | RBH | 0.0 | 0.0 | 1.337038 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0464000 | RBH | 2.1016625 | 13.7045715 | 4.983744 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028710 | RBH | 0.066959 | 0.166503 | 0.127936 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0481800 | RBH | 0.580335 | 0.3979945 | 6.0066625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029040 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028930 | RBH | 0.0 | 0.0 | 0.147182 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029180 | RBH | 0.0 | 0.615522 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028950 | RBH | 0.0 | 2.373336 | 1.482090 |
| Os XI: R9311 | R9311 | AGIS | R9311C02g08664 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_02g0326500 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_02g0330300 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_02g0309700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_02g0328100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0203298400.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0208934800.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_013238 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0208290600.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0208585000.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0203748600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0203303800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0204189600.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0203671800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0203733400.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0203254800.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0203266600.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0208441200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0203277400.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0203294000.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0202065600.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0203321000.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0203323200.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0203297100.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0204540600.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0203937600.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0211748000.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0204628600.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0203229800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0203266200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0203309000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0203286000.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0203442200.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0203337400.01 | RBH | None | None | None |
