Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0428300 | OGI:01078670 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr01:27430802-27434534 | ||||||||
| Gene Symbol | OsZHD5,ZHD5 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | GCAATAACTAATTGTATTTTTATCTGACAAGTTACACTTTACTTTCAAACAGACTCTGTAAATTTGCTTGAGTTTCGATGTGCTAATACCATCCTCTTTGTTGTTTTTTCTTGGATGAAGACATATATGCTTGGTCTGGTTATTCTTCTCTGATAGGTTCTTGTTTTGTCATTATTTTCGTGTGTAGGAATCTGAGGTCAAAGGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCATAATCATAACATCATCTCGCTGATGCTAATTTCCTGCATGAGTATCCTCCTTCCGAACTCTTTATGCCATCTCTTCGTCTATGAGACGGTAACTTGTAAACACATACTTTTCTGGTCGTCATTGTTGTGAATTGCAATAGTGGACAATGGTAGTTATATGCAATCTTTACACCAAATGCGTTCAGATCAATCCTGGTATTGGATCCAACTTTGTTCTCCCAGGTCCAGATTTTCTGGGGCCTGCGAAGTACAAACCTAATACAGTCATTCAACAGCATTAAACGTCATCACAGGCAAAAACAATGTTGGATAGGGGTTTATCCAGATTTGAAGTACTATGTCTAATTCGGATTTAAGTTGTTATATTTTGGAATCAAGGGAGTAGTAGATTACTTAACCATTACTAGACATTCTTTCTCTGTCCTTGTCCAGGCGCACAAGCTATATAAATAGCTGACCACTTCATACTGTCACCATTTGTAAAAGACGACTCTCTCAAGCATAGCTCCACCAATCTTACGCACCTGGGATGGTGCGCAAAAATATTTTTGCTTGCTAAGCCACATGTTACATTTTACGAGAAATTGCACTGACTAGGAAGTGTTTATTTAAAGAGCAATTTTATATTTCTTAAGGAGGTACCATGAAATACCACATTTTCTAGATACTATGATATATCAAATTTTACATTAAAATTTTAGTAACTCATGGTACCAAGAGATACCAGGAAGATTATCGGGAGTTTTACTAATTACAAATTAAGGCTAAGTTCGGCATCTAGGGTTGGGAACTCACTCCCCTCTTTTCAAACTGCTAAATGATATTTTTTTTTTAAAAAATTATATACGAAAGTTGCTTAAAAAATCAAATTGATCTATTTTTTTTAAAAAGCTAATATTTAATTAATCACGTGCTAATGGATTGCTCCGTTTTTTTTTCGGGAGGGATTTGCTCCCAACCACAAGGAACGAACATAGCCTAAGTGTACACACTTGAGCAGCTGTGACTAAAATGTGTTAGGTTCTGCCTTAAGAAATAAATACCTTCAATGACATGCTTTAGAATCGACTATTAAGCTAACTAACGAATTCGTGGTGCTGTAAACATGAGTTTGAAGCATGATTTCAGAATGAAATTTCAGAGTATTGCATTCCAATGTGAGTGGGTATTTGGTTAAAAAAAACCGTATAAATTTTGATGGCAGTGCCCAAACATTCATATAATACTATGGCATAGTAATATTTGTTTGTCTTCATCTATTTTAGACTCCACATGGTTTTTTCTTACACCATGAAGCGTTAATGAATACCCAAGATCTTTATTAGAGCAGGTACAATAGCAGGCTACAAGTCAGTTATAAATATATTTTAAAAAGATAAAAGAAGAGAGAAGAGTAGCGGGCTATAAATCTGTAGCCAGCTGCAGCACGGACTCCAAAGCGTAATGTGTGTATGACAGGTGGGACCAGACATTAATAGTGTACTAAGTAACTATTGTATGAATTGGCTATAGATGATTCGAAGTTAGTAGTTGGCTATACTATTAAACTTACTCTTAGACGTTGAAGTTTTCTTTTTTTTTTTCCTTTTGTTTTTTTCAGCTTGTCTGTTCTGCTAAATTCTTTGAGCGCATTTATTACATCCTTGTCAACCTTTTCCTCCTTCGCAACACGGACCTCACAATTTCTTCAAACAAAATCAACAAAATCTTTGCAATCAAGCTTATAGATGATAGATGTGGACACGTACCATGTGATGTCCGGCCATGCACGTAAATCCCAGCCGCCCACCAGTGCACAAATTGCAAATGCCAACTATAGATAGATTGTTCAGCACCTCCGGTTACTATCAGATCATTTCCTTCATATCTCTTCCTCCCTGACCCACCCTAATTCCGGACGGAAAAAATCAACCGGAAATGAATGGTGACTGGTGTGCCATCGATGTTGGATGCTGAATTTTCTTGTTACTTCCTCCGCTTTACAATATAAGTCATTTTAACATTTTTCACATTTATATTGATGTTAATGAATCTAAATAGATATATATGTGTAGATTCATTAACATCAATATGAATGTGAGAAATGCTAGAATAACTTATATTGTGAAACGAAAGGAGTATGGAACAACTCCTCCCAGAAAGAAGGAAAACGTCGAGAAATATAATAAACTGCCTTATCTTTCGAACCATCATCACACAGATATACAGCTTAGAGGCTGATCACGGCCATAGTTCTGACTTTTTTTTAGATAATGAATTTTCATTAATCCAGCCATAGTTCTGACTTTTGACCAGCCCTTTTACCGCCTTTTGTCACTAGCGCAAGTTACCAATCAGAGAAAAAAGCCGTGTATATGTATACAGTTATCTTCAGTTGACTGGCATGAGATTCCTTTCGATTTTAATGGCAGTTGATTGTAATCCATGCTCTGAATGGTCAATTTTTTTTTGATCTGTTTGGCTTACAAAAATATACTAACAGTGTAAGACAGTAACGAATCAGAGCTCACAGCTACGCAAACGCGGGATGCCAAAATCTAACCCACCTATTGGTCTTAAAATGGACTTTTTTCTATCTATAAGAAGAATCTAATCCAACCTATATTGCATCTACCGTACCAATTATTCAGTAATTAAAAGGTCAGAAGAAGAATAATAATTTGATTAGTACAAGAATAGGAAAAGAACATCAAATGGCAGGAAGGAGGGGGGCTCTACCTTCCCCGCTCGTTTCGATCGAACCTTTGTCTCCTCCCATACATGGCATCCTGCCTACTGCTGCTGTTCCTGCCTGTTCTCCTGCTGCTGTTTCTGCTTGAAGCTATGCTTGTTGTTGTGCATCCACACCTTGAGCGCTTGCCTCCGGACGCCGACCTGCGCGCAGAAGTGCTCCACCGTCGCCTCCTCCTGCCGCTGGATCCTCCACCCCACGCGCTCCGCGAACGCCAGCATCTGCTCCTTCTGCTCCCGCGTGAACGTCGTGCGTGACCGCCTCCGTGGCTGCACCGGCGAGGGCCGCAGCCGCTCGTCGCTGGAGGACGCGGTCGTGGTGCCAGTGCCGCCGCTGGGCGTGCCGTAGCCAGGGAACGGCAAACCTTGCTTGCTGGCGGCCGCTGCAGGCGGCAGCAGCAGCGCGGGTGGTGCGCGCGAGTTGATGGACGCCGGCAGGTGCAGCTGCAGCAGCCGTGCTGCGCCCGCGCGGCCCGGGGAAGGGTCCCGGCGGTGGAAGCTGCGGTGGCAGCCGCAGGCCGCGCAGGCGAGCGGCTCCTCGGTGGACGCCGGCATGAACTCGCCGCAGCCATCCACGACGTGGCCGCCCGAGGCCGCCGCGTGGTTCCGGAGGCACTCGTGGTACCGGCACCTGATCGTCTCGGGGGCGGCCGACGTCAGCACGCGGTGAGGCGGCGTGGGCGGGGATGAGCAGCCACCGCCCACGTCGCCGGCGTCCTCCTCGTGCTCGCTGAGCTCCAT
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| CDS seq | ATGGAGCTCAGCGAGCACGAGGAGGACGCCGGCGACGTGGGCGGTGGCTGCTCATCCCCGCCCACGCCGCCTCACCGCGTGCTGACGTCGGCCGCCCCCGAGACGATCAGGTGCCGGTACCACGAGTGCCTCCGGAACCACGCGGCGGCCTCGGGCGGCCACGTCGTGGATGGCTGCGGCGAGTTCATGCCGGCGTCCACCGAGGAGCCGCTCGCCTGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGGGACCCTTCCCCGGGCCGCGCGGGCGCAGCACGGCTGCTGCAGCTGCACCTGCCGGCGTCCATCAACTCGCGCGCACCACCCGCGCTGCTGCTGCCGCCTGCAGCGGCCGCCAGCAAGCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGCGTCCTCCAGCGACGAGCGGCTGCGGCCCTCGCCGGTGCAGCCACGGAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCAGGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCAAGCAGAAACAGCAGCAGGAGAACAGGCAGGAACAGCAGCAAAATTGTGAGGTCCGTGTTGCGAAGGAGGAAAAGGTTGACAAGGATGCCCCAGAAAATCTGGACCTGGGAGAACAAAGTTGGATCCAATACCAGGATTGA
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| Protein seq | MELSEHEEDAGDVGGGCSSPPTPPHRVLTSAAPETIRCRYHECLRNHAAASGGHVVDGCGEFMPASTEEPLACAACGCHRSFHRRDPSPGRAGAARLLQLHLPASINSRAPPALLLPPAAAASKQGLPFPGYGTPSGGTGTTTASSSDERLRPSPVQPRRRSRTTFTREQKEQMLAFAERVGWRIQRQEEATVEHFCAQVGVRRQALKVWMHNNKHSFKQKQQQENRQEQQQNCEVRVAKEEKVDKDAPENLDLGEQSWIQYQD |
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| Function | Zinc-finger homeodomain protein 5 [UniProtKB/Swiss-Prot:A2WSZ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0428300 | OsMH63_01T0428300-mRNA-1 | Chr01 | 27430802 | 27434534 | - | maker | ||
| CDS seq | ATGGAGCTCAGCGAGCACGAGGAGGACGCCGGCGACGTGGGCGGTGGCTGCTCATCCCCGCCCACGCCGCCTCACCGCGTGCTGACGTCGGCCGCCCCCGAGACGATCAGGTGCCGGTACCACGAGTGCCTCCGGAACCACGCGGCGGCCTCGGGCGGCCACGTCGTGGATGGCTGCGGCGAGTTCATGCCGGCGTCCACCGAGGAGCCGCTCGCCTGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGGGACCCTTCCCCGGGCCGCGCGGGCGCAGCACGGCTGCTGCAGCTGCACCTGCCGGCGTCCATCAACTCGCGCGCACCACCCGCGCTGCTGCTGCCGCCTGCAGCGGCCGCCAGCAAGCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGCGTCCTCCAGCGACGAGCGGCTGCGGCCCTCGCCGGTGCAGCCACGGAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCAGGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCAAGCAGAAACAGCAGCAGGAGAACAGGCAGGAACAGCAGCAAAATTGTGAGGTCCGTGTTGCGAAGGAGGAAAAGGTTGACAAGGATGCCCCAGAAAATCTGGACCTGGGAGAACAAAGTTGGATCCAATACCAGGATTGA
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| Protein seq | MELSEHEEDAGDVGGGCSSPPTPPHRVLTSAAPETIRCRYHECLRNHAAASGGHVVDGCGEFMPASTEEPLACAACGCHRSFHRRDPSPGRAGAARLLQLHLPASINSRAPPALLLPPAAAASKQGLPFPGYGTPSGGTGTTTASSSDERLRPSPVQPRRRSRTTFTREQKEQMLAFAERVGWRIQRQEEATVEHFCAQVGVRRQALKVWMHNNKHSFKQKQQQENRQEQQQNCEVRVAKEEKVDKDAPENLDLGEQSWIQYQD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 17.893146 | 1.200215 | 0.1725765 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0635550 | RBH | 3.777024 | 6.016349 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g44430 | RBH | 0.302908 | 0.549414 | 4.301448 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0635550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026480 | SBH | 0.187816 | 0.0 | 9.952855 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026110 | RBH | 0.586170 | 0.0 | 27.302847 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026460 | SBH | 3.658129 | 0.0 | 54.185791 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025770 | SBH | 0.035243 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025510 | SBH | 20.111660 | 3.368976 | 12.601832 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0450300 | RBH | 1.3160455 | 2.865705 | 8.319533 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0417700 | RBH | 11.956823 | 0.9372905 | 3.326851 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025470 | SBH | 0.844536 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025410 | RBH | 1.765374 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025690 | SBH | 8.594852 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025710 | SBH | 2.963071 | 0.0 | 3.135021 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025560 | SBH | 1.726186 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | R9311C01g02877 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_01g0303500 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_01g0307100 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_01g0292800 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_01g0312600 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0100957200.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0103518400.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_002799 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0103249400.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0103285400.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0101133000.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0100956000.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0100586000.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0101059400.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0101125400.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0100964600.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0100930800.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0103187600.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0100946400.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0100945200.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0100699600.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0100970200.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0100948800.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0100964000.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0101603800.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0101868600.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0105338600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0100975400.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0100929200.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0100938400.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0100962000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0100963600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0100872400.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0100949600.01 | RBH | None | None | None |
