Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| TMG0615928100.01 | OGI:06013490 | 46/50 | Os XI-2: TM | TM | SICAU | Chr06:4595713-4598164 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | ACTTCACCTTCCAATGATCGAAGCGGAAAGCCAAATGGCGGAGGCGGCGTCGTACGAGGAGCAGCGGAGGCGGCAGGTGGAGGCGAACAAGCGGAAGCTGGAGGAGCTCCGCCTCCACCACCTCTCCGCCGCCGTCCGCGAATCCGCCGCCAAGCCGTCGCCGGTCAGATTCCCCTCACCATTTCTTTTCTTTTTGGATTTCCCCTGGTTTTTCTCGGTCTTTGATTCTCTCTGGTTGTTTTGTTTGTGGGTCTCTTCCTGATCTGGGCGGTTGCCGGTGGGTGCAGGTGAAGCAGCGGAAGAGGAAGGCGCGTGCGCTGCCGGGCGCCGGCGAGGATGCCCCGCTCCGGCGGTCCGGCCGCGTCGCCAACCTCCCCGAGAAGCCCAAGTACCGCGACGTATGTGGAGACAGTGTGATTGATGTGATAGTTTTTAAAAGATTTCGTTTCTTCTGTTGGTTTTATTGAGGAATTAACTCGTTCAAGATTGCAATCTTTGATGGGTTTATGTGCAGGAGTTCCAAGATTTCGAGAAGAGGATAAGGAGGTATAGTGAATGCGTGCCCCTAATCTCCCAGTCGAAATTTCTGCATCCAGTGTGGATTATCAGGGATGGTTTTCTGAGATTCTTGAACTGTTTGTTCATCAGGTCTTATGGCGGCAAGAGGAGGGATTTGTCCAATCGAGTTTACGCGACCGACGAGCAAAGGGACTACGCCATCAACGCTGCTCAAGAGCTGGAAGAGGAGCTCGGCTCCGACTACCCAATCTTCGTCAAGCCCATGCTTCAGTCCCATGTCACTGGAGGGTTCTGGCTGGTAAGCCTGTAACTTCACTCTCATCTTGCTTTGCATCATGTAGGTTGTAGGGATGAGGCAGCTGATTCTTGGGGTGAATGAAATTGGTAGAGCCTGCCGACGCATTTCAGCCGGAAGTATCTGCCGAAGCGCGACGAGACTATCCGTTTGGTGGATGAGGAGGATGATGAGTTTGACACCCTCTATCTTGCCAACAAGAGGGGGCTCAGTGGAGGGTGGAGGGGGTTTTCCATTGCTCATAAGCTAGTTGATGGAGATTGTTTGGTGTTCCAACTTATCCAGCGCACGAAGTTCAAGGTGAGTTTGGAGTTGTTCGGGCACGGCACGAATGTTATATGAAGATCTCCTGAATCTTTGCACGGTTGATGATAATTCTGGTTGATTTGTAGTAGCCGACTAATCATGTGTTAGGTTTATTGATGTCTTAAATCAGAAAAACAGTTCATCACCAGTTCACCATAAATAACTGGAATGAATGTGTCATTGACTCATGGTATCCCAATTTTCAAGCATTCATTGTTTGCACATGTTATTGCTATAATTTGTTGAGCCTTGCCAGGTAATGTATGTGTCTAAATATAGGAAAATATTGTGCAGGAAACGTTGGTTCTTATAAGGCCTAACCAGGAGAAATCTACATTAGTGCTAACGATGTTTTGTCTTGTATCAAAATGGTGCAGGTCTACATAATCAGAGCAAGTTCCTACTATGAAACTGACGACTGATGTAGAGGCTCCAAATATCTGTGATTGGGGCACAGGTGTGCTGTTCTTGTTATTTTTGGCATGTGTTGTAGTTGGAATTTGAATCTATCGTTCAAATTGATAGCTCTACTAGACTACTGGTCTTCTGTTGGAGCCTGATAAGACTTTGCCGTTTTCACTTCGAAGATGTGAATTACTCCCTTATTTAGCAATCAGGAGTTCTGCAGTTTTCACTTGGAAGATGTGACATATGCAGTTTTATGCGATGGTAGATATGCAATCAGGAGTGCATAACTTTTGCCTATATTTGTTTTAGCAATTACGTGTTATTACGATTATAAAATTTAAATAAATATATGCAATGGTGTATTGTTCTGGAATTACTGTTAATGAAATATGCTAGTAAAATTTATGGCCAAATCAGTTTTTAAAAATCGACCACAAGAATCTTAAAATGAAAAATATATAGATACAGAGTACGTTTAAAACTGTCTAACAAAGCTTCGTCTTTTCTCCCACTGCTCAGCTCTTCTTTTCTTCTAATTTGATTATTATCTATCATACATGATGTAATGATACTGACTTGATTCCTTGTTAATTGGTCACTTTACTTTGCAGGTCTTCTAGTGAATTAGGTTGACCTGAATTGGAGATTGCTAGGCCATCTTCAGTCTTTTGAGTGATGAACAATGTTCAAAATATTAACTACGTATTAGGTTACTTATGGACTAGCCATCCTCAGTCTTTTGATGGCAAACAATGTCAGAAGTATTAAATTGGCATATAATTTACCAGCTAATAGGCTAAGTTGTTAGATTTACTTTGAGCTTGCACAGTTCAGAAATCTGCACTATGTAAGGGATATCATTGCAATTGGTAACTGAGGATGCTTTTTTATACTATTACTCCTTATGTGATGCGTCTGAATTCC
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| CDS seq | ATGATCGAAGCGGAAAGCCAAATGGCGGAGGCGGCGTCGTACGAGGAGCAGCGGAGGCGGCAGGTGGAGGCGAACAAGCGGAAGCTGGAGGAGCTCCGCCTCCACCACCTCTCCGCCGCCGTCCGCGAATCCGCCGCCAAGCCGTCGCCGGTGAAGCAGCGGAAGAGGAAGGCGCGTGCGCTGCCGGGCGCCGGCGAGGATGCCCCGCTCCGGCGGTCCGGCCGCGTCGCCAACCTCCCCGAGAAGCCCAAGTACCGCGACGAGTTCCAAGATTTCGAGAAGAGGATAAGGAGGTCTTATGGCGGCAAGAGGAGGGATTTGTCCAATCGAGTTTACGCGACCGACGAGCAAAGGGACTACGCCATCAACGCTGCTCAAGAGCTGGAAGAGGAGCTCGGCTCCGACTACCCAATCTTCGTCAAGCCCATGCTTCAGTCCCATGTCACTGGAGGGTTCTGGCTGAGCCTGCCGACGCATTTCAGCCGGAAGTATCTGCCGAAGCGCGACGAGACTATCCGTTTGGTGGATGAGGAGGATGATGAGTTTGACACCCTCTATCTTGCCAACAAGAGGGGGCTCAGTGGAGGGTGGAGGGGGTTTTCCATTGCTCATAAGCTAGTTGATGGAGATTGTTTGGTGTTCCAACTTATCCAGCGCACGAAGTTCAAGGTCTACATAATCAGAGCAAGTTCCTACTATGAAACTGACGACTGA
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| Protein seq | MIEAESQMAEAASYEEQRRRQVEANKRKLEELRLHHLSAAVRESAAKPSPVKQRKRKARALPGAGEDAPLRRSGRVANLPEKPKYRDEFQDFEKRIRRSYGGKRRDLSNRVYATDEQRDYAINAAQELEEELGSDYPIFVKPMLQSHVTGGFWLSLPTHFSRKYLPKRDETIRLVDEEDDEFDTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQRTKFKVYIIRASSYYETDD |
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| Function | B3 domain-containing protein Os06g0194400 [UniProtKB/Swiss-Prot:Q69V36] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| TMG0615928100.01 | TMG0615928100.01.T03 | Chr06 | 4595720 | 4596379 | + | IGDBv1 | ||
| CDS seq | ATGATCGAAGCGGAAAGCCAAATGGCGGAGGCGGCGTCGTACGAGGAGCAGCGGAGGCGGCAGGTGGAGGCGAACAAGCGGAAGCTGGAGGAGCTCCGCCTCCACCACCTCTCCGCCGCCGTCCGCGAATCCGCCGCCAAGCCGTCGCCGGTGAAGCAGCGGAAGAGGAAGGCGCGTGCGCTGCCGGGCGCCGGCGAGGATGCCCCGCTCCGGCGGTCCGGCCGCGTCGCCAACCTCCCCGAGAAGCCCAAGTACCGCGACGTATGTGGAGACAGTGTGATTGATGTGATAGTTTTTAAAAGATTTCGTTTCTTCTGTTGGTTTTATTGA
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| Protein seq | MIEAESQMAEAASYEEQRRRQVEANKRKLEELRLHHLSAAVRESAAKPSPVKQRKRKARALPGAGEDAPLRRSGRVANLPEKPKYRDVCGDSVIDVIVFKRFRFFCWFY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0194400 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09420 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0194400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006600 | RBH | 0.0 | 4.222258 | 0.501055 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006430 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006420 | RBH | 0.0 | 5.384682 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006550 | RBH | 0.0 | 0.119117 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006420 | RBH | 2.113260 | 2.778039 | 0.909702 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0080000 | RBH | 1.675274 | 1.406774 | 2.55665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006290 | RBH | 0.077840 | 0.129041 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0080000 | RBH | 1.748038 | 0.189903 | 18.3565795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006640 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006510 | RBH | 0.000000 | 7.821748 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006540 | RBH | 0.000000 | 5.100365 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006570 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006260 | RBH | 0.213028 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006540 | RBH | 0.383883 | 0.0 | 0.634019 |
| Os XI: R9311 | R9311 | AGIS | R9311C06g22130 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0609805900.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0621263500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_018641 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0618431900.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0620385100.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0612177300.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0613974500.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0616232500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0613355500.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0610841300.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0609745700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0613072300.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0620211500.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0612326100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0614134500.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0611802100.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0609805700.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0609827700.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0613897700.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0611769500.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0612194700.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0626213100.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0611529500.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0609826500.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0613163900.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0613516100.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0616825700.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0611980700.01 | RBH | None | None | None |
