Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0010690 | OGI:04060270 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:18439722-18440651 | ||||||||
| Gene Symbol | B3 | ||||||||||
| DNA seq | gccaaatttgtcttagttatttctgaattcatcctggaatcaaattgtttccacagctgcattacctgaaactgaaacctcccaaatttcagttcaaaacgagctgctcgagatggcatcgatggcgatgaacaatggcagcagcagcagcaccatcgccctagtctatgacgatgggggtggccgaggtgtagccgccggcgcggccccggatcctcgccgggatctccgcgcggaggacctgcaccctgaactcgacgcgctcctgctcgccgccgccgccgacgaggagctcgaacacgcacccgtcgccgagcctgaggtcgttgtccacggcgaagccgcgccacccggcctccagccgctggatcagccgcccgccggtgaaccgcatcccccacgaccgcccccgccacgacagcgtcgccggcgtcgtcctcgacggcagcagcggcgcgaacgacctcgggaccacctgcctccccaaaaggttttttactccccgatcaaatcgaagtttagtgaactcgaatccgaagatatcaagagcagagctgtgatttttggtttggatttaTttttttttggttttaccacttggaatggcggctggacatgggacttgcacatgatgcaggtgaagtagggcttcccgaggagtgggagcaccccgtggcgggcgaccttctccggctccggctccggcggccgcggcggcgccgcctcagtaccagcagcaatgtggccgctgccaccctcgccgccgctctcctccgcagcgtctaccgccgcaggatcctcggcgcctgcatcgccggaggactccggtgaggagcagcgaagctcagtgggatcactggccatcggacttggggaagaagaagaggggatcgaagggagagcggtggcagctcgcattgcagctttggt
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| CDS seq | atgcgagctgccaccgctctcccttcgatcccctcttcttcttccccaagtccgatggccagtgatcccactgagcttcgctgctcctcaccggagtcctccggcgatgcaggcgccgaggatcctgcggcggtagacgctgcggaggagagcggcggcgagggtggcagcggccacattgctgctggtactgaggcggcgccgccgcggccgccggagccggagccggagaaggtcgcccgccacggggtgctcccactcctcgggaagccctacttcacctgcatcatgtgcaagtcccatgtccagccgccattccaagtggtggtcccgaggtcgttcgcgccgctgctgccgtcgaggacgacgccggcgacgctgtcgtggcgggggcggtcgtgggggatgcggttcaccggcgggcggctgatccagcggctggaggccgggtggcgcggcttcgccgtggacaacgacctcaggctcggcgacgggtgcgtgttcgagctcctcgtcggcggcggcggcgagcaggagcgcgtcgagttcagggtgcaggtcctccgcgcggagatcccggcgaggatccggggccgcgccggcggctacacctcggccacccccatcgtcatagactag
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| Protein seq | MRAATALPSIPSSSSPSPMASDPTELRCSSPESSGDAGAEDPAAVDAAEESGGEGGSGHIAAGTEAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGGYTSATPIVID |
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| Function | B3 domain-containing protein Os04g0386900 [UniProtKB/Swiss-Prot:Q7XLP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0010690 | OsNaBo_04g0010690.01 | Chr04 | 18439722 | 18440651 | - | NAM | ||
| CDS seq | atgcgagctgccaccgctctcccttcgatcccctcttcttcttccccaagtccgatggccagtgatcccactgagcttcgctgctcctcaccggagtcctccggcgatgcaggcgccgaggatcctgcggcggtagacgctgcggaggagagcggcggcgagggtggcagcggccacattgctgctggtactgaggcggcgccgccgcggccgccggagccggagccggagaaggtcgcccgccacggggtgctcccactcctcgggaagccctacttcacctgcatcatgtgcaagtcccatgtccagccgccattccaagtggtggtcccgaggtcgttcgcgccgctgctgccgtcgaggacgacgccggcgacgctgtcgtggcgggggcggtcgtgggggatgcggttcaccggcgggcggctgatccagcggctggaggccgggtggcgcggcttcgccgtggacaacgacctcaggctcggcgacgggtgcgtgttcgagctcctcgtcggcggcggcggcgagcaggagcgcgtcgagttcagggtgcaggtcctccgcgcggagatcccggcgaggatccggggccgcgccggcggctacacctcggccacccccatcgtcatagactag
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| Protein seq | MRAATALPSIPSSSSPSPMASDPTELRCSSPESSGDAGAEDPAAVDAAEESGGEGGSGHIAAGTEAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGGYTSATPIVID
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0386900 | RBH | 0.0 | 0.0 | 2.241713 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g31730 | RBH | 0.0 | 0.0 | 0.565916 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0386900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011620 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011530 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0302400 | RBH | 0.6210685 | 0.333865 | 2.692551 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010480 | RBH | 0.0 | 0.197123 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0299100 | RBH | 0.6625485 | 0.053073 | 11.068024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010710 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011250 | RBH | 0.0 | 0.0 | 0.851576 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011440 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
