Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0011620 | OGI:04060270 | 50/50 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:18676950-18677879 | ||||||||
| Gene Symbol | B3 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | gccaaatttgtcttagttatttctgaattcatcctggaatcaaattgtttccacagctgcattacctgaaactgaaacctcccaaatttcagttcaaaacgagctgctcgagatggcatcgatggcgatgaacaatggcagcagcagcagcaccatcgccctagtctatgacgatgggggtggccgaggtgtagccgccggcgcggccccggatcctcgccgggatctccgcgcggaggacctgcaccctgaactcgacgcgctcctgctcgccgccgccgccgacgaggagctcgaacacgcacccgtcgccgagcctgaggtcgttgtccacggcgaagccgcgccacccggcctccagccgctggatcagccgcccgccggtgaaccgcatcccccacgaccgcccccgccacgacagcgtcgccggcgtcgtcctcgacggcagcagcggcgcgaacgacctcgggaccacctgcctccccaaaaggttttttactccccgatcaaatcgaagtttagtgaactcgaatccgaagatatcaagagcagagctgtgatttttggtttggatttatttttttttggttttaccacttggaatggcggctggacatgggacttgcacatgatgcaggtgaagtagggcttcccgaggagtgggagcaccccgtggcgggcgaccttctccggctccggctccggcggccgcggcggcgccgcctcagtaccagcagcaatgtggccgctgccaccctcgccgccgctctcctccgcagcgtctaccgccgcaggatcctcggcgcctgcatcgccggaggactccggtgaggagcagcgaagctcagtgggatcactggccatcggacttggggaagaagaagaggggatcgaagggagagcggtggcagctcgcattgcagctttggt
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| CDS seq | atgcgagctgccaccgctctcccttcgatcccctcttcttcttccccaagtccgatggccagtgatcccactgagcttcgctgctcctcaccggagtcctccggcgatgcaggcgccgaggatcctgcggcggtagacgctgcggaggagagcggcggcgagggtggcagcggccacattgctgctggtactgaggcggcgccgccgcggccgccggagccggagccggagaaggtcgcccgccacggggtgctcccactcctcgggaagccctacttcacctgcatcatgtgcaagtcccatgtccagccgccattccaagtggtggtcccgaggtcgttcgcgccgctgctgccgtcgaggacgacgccggcgacgctgtcgtggcgggggcggtcgtgggggatgcggttcaccggcgggcggctgatccagcggctggaggccgggtggcgcggcttcgccgtggacaacgacctcaggctcggcgacgggtgcgtgttcgagctcctcgtcggcggcggcggcgagcaggagcgcgtcgagttcagggtgcaggtcctccgcgcggagatcccggcgaggatccggggccgcgccggcggctacacctcggccacccccatcgtcatagactag
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| Protein seq | MRAATALPSIPSSSSPSPMASDPTELRCSSPESSGDAGAEDPAAVDAAEESGGEGGSGHIAAGTEAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGGYTSATPIVID |
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| Function | B3 domain-containing protein Os04g0386900 [UniProtKB/Swiss-Prot:Q7XLP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0011620 | OsCMeo_04g0011620.01 | Chr04 | 18676950 | 18677879 | - | NAM | ||
| CDS seq | - |
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| Protein seq | MRAATALPSIPSSSSPSPMASDPTELRCSSPESSGDAGAEDPAAVDAAEESGGEGGSGHIAAGTEAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGGYTSATPIVID
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0386900 | RBH | 0.0 | 0.0 | 2.241713 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g31730 | RBH | 0.0 | 0.0 | 0.565916 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0386900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011530 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0302400 | RBH | 0.6210685 | 0.333865 | 2.692551 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010480 | RBH | 0.0 | 0.197123 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0299100 | RBH | 0.6625485 | 0.053073 | 11.068024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010710 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011250 | RBH | 0.0 | 0.0 | 0.851576 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011440 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010690 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g15724 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0159800 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0154500 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0143700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0154900 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0406839800.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0415695800.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_015655 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0413272400.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0415071400.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0407650000.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0408274800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0410759400.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0407630600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0407602800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0406763200.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0407783600.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0414866600.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0408527600.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0408381800.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0408986800.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0406835200.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0406820800.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0408231400.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0408421400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0408155600.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0419207000.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0410923800.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0406738600.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0406774000.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0407004100.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0407700000.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0411557800.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0407070100.01 | RBH | None | None | None |
