Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0028300 | OGI:02077060 | 50/50 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:28396093-28398036 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | acgcaccgcgcaacgctccgccccaaaaggccagacaacgcccgttgcgccgcctcccaaactccgcctcctcctcctccgctgcacccccgcaaaaaccctagcgcaccgacttcgcgatctccgcgccgcagccatgaagggcaaggccgacgcctccaagaagggcgagggcaggtaagatcctctctccggccgtctttgctgctgcgtatgggcggtggaggagggttttctggcggtggctgttgttggttcacatctgagcggttttgtgtttggtgttgttgttgttgttgttgttaggctcaaggccgccggcggcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgCccgccgtctgctttcttcgtcttcatgtgagtttctcgctccctcgcccacgttttgctctgttcagatctagtacagatctgtcttgagtttttgtttaatttttgttgattttcttgaattttaatattttttgtggtttttattttttacttttgcaggtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaagagtgtcgccgccgtgagcttcctgacaccatcacctttttcgccactttttggctgatgtactttagatgtccaaTttttttctcctctgttggttcattaggtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagtgagtttttctctgcagtgttcaaaaattagtacatgttcctattaagtgtgtgcatctgttatttagcatacatcatccatgagtatcactagaggactgtttaataattgttctggcctgtttgttaggaaaaagattgaattgctcctaaagtactagttgaatgaaaattgcaatttgtttttgaattctactcagtgaagcgcttaagtacacataagtaCcatgggtggctattgatgtgacaatgtgccatatgtttttggcccttcgtgttaaattttattaggagaaggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggccaacttcgataagaaggtgatgatagaataattgtgcatcctaattatagagcccttcaagcgttaggcactaattggacttcttgaattacttcttcaggagagcacaagctcaaagaaagctaagacccatgatgatggagaaggctctgacaagtccaagtctgaggtcgacgatgaccaggatggtggtagcgatgaggtaatcattaaaggaacacccggtgccctattttagcttgaatgcccaatgaatttttactactgctagttgtgttgctaatgaacatttttaatttgctctttgcaggaaaatgaggacgatgaagagtaaatagtgtatccgggggcatgaggtagcaaactgtgtcttaggtcccctattagctttactagtttgctatcttcgaccctaagatgttgggaataggcgtgcgtgggtgtgaaggggaccgtttagaattatggtactcagaatgttttcctacagtggattagcaaagaaaaagcctgaatgccgcctgctgttctgttgcttttcttttgctaaccacttgtcacagaactttgtttcatttgctaatctagtagctattcagttagctttcttttcgttaatttcgttaattgcatattacatttggtgttatacacttgtttcgatgcatttggtttacctagcttaacacacatggtgaatccctcccattgctttctgctttcgttagatgcctgctgaagctacttcatagtggatggaattatattgttcgttgagtcggtaggcttctgtgatggtactcaattgtcattgcccgctcttatgctgttccatctaattgtgatctaagatttcgtatcaaatt
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| CDS seq | atgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcggcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgCccgccgtctgctttcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaagagtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagagaaggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggccaacttcgataagaaggagagcacaagctcaaagaaagctaagacccatgatgatggagaaggctctgacaagtccaagtctgaggtcgacgatgaccaggatggtggtagcgatgaggaaaatgaggacgatgaagagtaa
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| Protein seq | MKGKADASKKGEGRLKAAGGAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQDGGSDEENEDDEE |
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| Function | HMG1/2-like protein [UniProtKB/Swiss-Prot:P40620] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0028300 | OsGoSa_02g0028300.01 | Chr02 | 28396093 | 28398036 | + | NAM | ||
| CDS seq | - |
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| Protein seq | MKGKADASKKGEGRLKAAGGAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQDGGSDEENEDDEE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 19.244528 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0670400 | RBH | 3.726830 | 3.094824 | 11.836705 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g44930 | RBH | 1.945717 | 1.627757 | 2.352360 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0670400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028460 | RBH | 0.667406 | 0.0 | 16.509691 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028550 | RBH | 0.000000 | 13.321198 | 5.127330 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028390 | RBH | 0.961290 | 29.295624 | 13.079723 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028010 | RBH | 0.000000 | 1.582854 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028150 | RBH | 0.946506 | 39.595451 | 19.142626 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0442300 | RBH | 13.5667805 | 13.6748585 | 83.7810365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027960 | RBH | 0.059944 | 4.347363 | 2.273808 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0470300 | RBH | 14.8673725 | 5.441328 | 76.846718 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028290 | RBH | 0.256346 | 0.670458 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028000 | RBH | 0.490389 | 44.201450 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022750 | RBH | 97.745903 | 65.160042 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028170 | RBH | 0.413347 | 6.367971 | 3.209283 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0027860 | RBH | 0.0 | 21.268402 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028430 | RBH | 0.000000 | 22.665466 | 7.482636 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028200 | RBH | 0.0 | 20.540562 | 21.979069 |
| Os XI: R9311 | R9311 | AGIS | R9311C02g08588 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_02g0317600 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_02g0320900 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_02g0301400 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_02g0318600 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0203255500.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0208847300.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_013161 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0208216700.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0208488300.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0203700900.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0203261500.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0204108100.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0203624500.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0203686100.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0203209700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0203223500.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0208364700.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0203232900.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0203251300.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0202047100.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0203278100.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0203280900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0203263100.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0204493100.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0203920500.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0211672300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0204552700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0203184300.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0203220700.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0203264100.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0203242300.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0203363300.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0203294100.01 | RBH | None | None | None |
