Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: ZS97RS3_MH63RS3_DEL0300680

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1A: Zhenshan 97 | ZS97RS3

Os XI-adm: Minghui 63 | MH63RS3

Chr03

1776738

1778619

SV Length:

Query Start:

Query End:

Allele sv Count:

1882 bp

1833390

1833396

33

Gene_id	Chromosome	Start	End
OsMH63_03G0027800	Chr03	1822248	1836395
OsMH63_03G0027900	Chr03	1833274	1837806

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
ZS97RS3_117425_DEL0301420	Chr03	1776738	1778619	1814017	1814023	1882
ZS97RS3_117534_DEL0301220	Chr03	1776738	1778619	1815061	1815067	1882
ZS97RS3_125619_DEL0300670	Chr03	1776738	1778619	1812934	1812940	1882
ZS97RS3_127518_DEL0300660	Chr03	1776738	1778619	1851785	1851791	1882
ZS97RS3_127564_DEL0300610	Chr03	1776738	1778619	1836038	1836044	1882
ZS97RS3_127652_DEL0301530	Chr03	1776738	1778619	1776558	1776564	1882
ZS97RS3_127742_DEL0300550	Chr03	1776738	1778619	1843943	1843949	1882
ZS97RS3_132424_DEL0300650	Chr03	1776738	1778619	1829111	1829117	1882
ZS97RS3_Basmati1_DEL0300790	Chr03	1776738	1778619	1815313	1815319	1882
ZS97RS3_CN1_DEL0300530	Chr03	1776738	1778619	1840808	1840814	1882
ZS97RS3_D62_DEL0300620	Chr03	1776738	1778619	1837376	1837382	1882
ZS97RS3_FH838_DEL0300560	Chr03	1776738	1778619	1832252	1832258	1882
ZS97RS3_FS32_DEL0300550	Chr03	1776738	1778619	1839758	1839764	1882
ZS97RS3_G630_DEL0300540	Chr03	1776738	1778619	1836778	1836784	1882
ZS97RS3_G8_DEL0300630	Chr03	1776738	1778619	1831506	1831512	1882
ZS97RS3_HZ_DEL0300590	Chr03	1776738	1778619	1846810	1846816	1882
ZS97RS3_IR64_DEL0301100	Chr03	1776738	1778619	1796191	1796197	1882
ZS97RS3_J4155_DEL0300640	Chr03	1776738	1778619	1835649	1835655	1882
ZS97RS3_J4155S_DEL0300660	Chr03	1776738	1778619	1848022	1848028	1882
ZS97RS3_LK638S_DEL0300640	Chr03	1776738	1778619	1855087	1855093	1882
ZS97RS3_R498_DEL0300650	Chr03	1776738	1778619	1844158	1844164	1882
ZS97RS3_R527_DEL0300700	Chr03	1776738	1778619	1832908	1832914	1882
ZS97RS3_R9311_DEL0300660	Chr03	1776738	1778619	1837472	1837478	1882
ZS97RS3_S548_DEL0300600	Chr03	1776738	1778619	1830495	1830501	1882
ZS97RS3_TM_DEL0300610	Chr03	1776738	1778619	1821605	1821611	1882
ZS97RS3_Tumba_DEL0300550	Chr03	1776738	1778619	1836585	1836591	1882
ZS97RS3_WSSM_DEL0300770	Chr03	1776738	1778619	1792155	1792161	1882
ZS97RS3_XL628S_DEL0300520	Chr03	1776738	1778619	1848619	1848625	1882
ZS97RS3_Y3551_DEL0300470	Chr03	1776738	1778619	1822790	1822796	1882
ZS97RS3_Y58S_DEL0300600	Chr03	1776738	1778619	1836623	1836629	1882
ZS97RS3_YX1_DEL0300630	Chr03	1776738	1778619	1840238	1840244	1882
ZS97RS3_OglaRS2_DEL0302570	Chr03	1776738	1778619	1740131	1740137	1882
ZS97RS3_MH63RS3_DEL0300680	Chr03	1776738	1778619	1833390	1833396	1882

>ZS97RS3_MH63RS3_DEL0300680
ACATGAT