Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: ZS97RS3_Lemont_DEL1150550

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1A: Zhenshan 97 | ZS97RS3

Os GJ-trp: Lemont | Lemont

Chr11

23348874

23352033

SV Length:

Query Start:

Query End:

Allele sv Count:

3170 bp

22384871

22388040

12 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
ZS97RS3_117534_DEL1133990	Chr11	23348874	23361463	12608383	12625423	17041
ZS97RS3_127742_DEL1145610	Chr11	23348874	23361463	13260692	13277719	17028
ZS97RS3_J4155_DEL1122360	Chr11	23348874	23361461	24987897	25000421	12525
ZS97RS3_J4155S_DEL1124410	Chr11	23348874	23361461	25355109	25367681	12573
ZS97RS3_Lemont_DEL1150550	Chr11	23348874	23352033	22384871	22388040	3170
ZS97RS3_R498_DEL1134420	Chr11	23348874	23361463	13012252	13029277	17026
ZS97RS3_R527_DEL1143680	Chr11	23348874	23361463	13307488	13324515	17028
ZS97RS3_R9311_DEL1142000	Chr11	23348874	23361463	13190760	13207757	16998
ZS97RS3_S548_DEL1140800	Chr11	23348874	23361463	13213463	13230490	17028
ZS97RS3_Y3551_DEL1146030	Chr11	23348874	23361463	13085082	13102101	17020
ZS97RS3_YX1_DEL1132700	Chr11	23348874	23361463	12783428	12800447	17020
ZS97RS3_MH63RS3_DEL1141190	Chr11	23348874	23361463	13292253	13309280	17028

>ZS97RS3_Lemont_DEL1150550
GTGTCACACCCCGAAGTTTTCCTCCCAAGCCAAATTGTAAATTACAAATGACCCCAAGAAAATGCAGAGGAAATCAGGATAAAACCCTAAGAAAACAATGCAAATAATAATCGGATTTGACATGTGGAATTTTTCTTGAATTCTACATGTCGAAATTCATTAACAGGATTTTTAGTGGAATTTTCAGAGCTCTAGAAATAATTTTAACCAATTAAAAATCACTAAAGTGCAATTTTTAATTCCAGGGAAAATCCTTTTCCTTTTTCTTTTTCTTTTCCCTCCCTTTTTCCTCCTTTTTTCTTTTCGGATGGGCCGCCGGCCCATTCCCCTCCTTCCTCCCCCTCCTCCTTGCTGGGCCGGCCGCAGGCCGAGGGCCCAGCCTGGCAGCCGCCGCCCGCCTCCTCTCTCGGGGTCGCCGACAGGTGGGGCCCACCTGTCGGGCCCGTCTCCCACCTCCCGCCGATCCCGGCGCGCCGCCGCGCCCGCAACCACCGCCGCGCCCACGTCTCCGCCTTCCCCGGGCCACGTCGGCCACGCCCGCGCGTGCGCCGCGTCTCCCGCGCCCTTTCCCCTCTCTCTCCCGCTCGCGCCCGCGCCCGAGATGGCCGGGATTCGAAAACCGAATCCCGCCTCTCTCTCCTCCCCACTCCCCCACGTCGGCCGTCGAATCCCGCCGCTCCCGGCCACGTCCGACTCCCTCTCCCCCTTTTTAAGCATCGCCGTCCTCCTCTCTCGCTTTTTCCCCATTTCGCCGATCTCTCCCGAGCTCCCCATCGCCTCCGCGCCGTGCAACCACCCGCCGCCGCCGCTTTTGCTACTCCGGCCGCCGCTAGCCGCCGCTAGGCTCGTCGCCGTCTCGCGCCGTCGCCGCCGTTAGCTTCGCGGGGTCGAAATCTACCTCGGCCGCCCCTTCCCCGTCGAGGTTCGCCGCCGGAGACCCATCCCCGTCGTGTGCCGGCAAGTGGCGCCATGGCCGCCGCCTTCGGCCGGCACTCTCGCCCTCCCACGCTCTTTCCTCTCTCTCTAATCCCTCTCCTTTTGTTCGTTAGGAGGTTCCGGAGCTCGTCCCGCCGTCGTCGTCGTCCTCCGTCGGCCGCCGTCGTCGACCGTTGTCGGTGAGGCTTCCCCCTCCTCTTTCTCCTTTTCCCCGTACCGTGTAGCCGCGTGCGCGCCGCTTAGCCGCGTAGCCGCCGCTCCTCCTCTAGCCGCCGCTCCCCGCCGCCGGTCGGTCGCCGTCGGTCGCCGCCTTGCGCCGCTGCCGCATGCGCGCCGCCGCCGTGTGAGCGCCGCGCCGCCGGCGCCATGGTCGCCGCCGTCTCGCGCCGCGCCCGCGCGTCCCGGCCGCGAGGTCCCGCCGCCGTCCGATCTACCCTTGGGTAGATCGGGGCCGTCGGTTCGGCCGCCACGTGGTGCCGCCGCCCCTCCTTTTCCCCGTGCCGCTGACCAGTGGGCCCGCGCGCCGCCACCCCCTTTCTCTCTCTCCCGGTCGCTGACCGGTGGGCCCCGCCTGTCGGCGCCGCGCCCCCTCCGTGCTGACGTCAGCCCTGGTTAATATTGCGCAATAAATTATTTAAGGATTTCTTTTATAGTAATAAACACAGTGAATCTTCTAAAAATCATAACTAATTCATCCGAGCTCCGTTTAATCCCATTCAAGTCTCAGTAAATCAAGAAAAATGTGTAGAATCCATTAAAAATGGTTTTGTTCTCTGTTTCAGTAGTCTTATAGCCTGTTTGCAATGTTTGCTTTGTATGTCGCTAGATTCCGATCCCTCCGACGCTCCGGTGTACTTCGAGATAGTCGCCGAGGTCCCTCCAGCAGCAGAGCAAGGCAAGTCATGCTTGTCACTTGAACATGTTGATCCTATATTGCAAATGCTCTATTGTTTTCTTTCAAATATTGCATTGTTTTATAATATCACTATGGGATGGATACCTATTGTTACAGCCATGCTTTTGGATATCATGCTCCTTTGTTAGCTTGGGTTATAACATGATTAGACTTTGGACTAGGAATTGCTTAGCCATGCTTAGTTCAACTAGCACACATTGGGGATCTCATTTAAAACCTAGACTATAGGTTTATATGATAATGTTGGTTTAATACCACCGCTCTGGTGTTGGTTAAATAAAATGAACCACATGGTGGGCTGTGGGTGCATGGTTTTGCTGGTCGCACCCATGGCAGTTAAGGACCGGTTCGCGGGATGCCCTGGAAGAATTTATCGTACTTACCACAAGCCAGCGTGGGCAACGGCTGGGCTTGTAGTGTAGCTTTCCTCTAGTCGACGCATCCAGGCAAGGGTGGGCGTGATGGAGCGGGGCGGGCCCTGCGACGGCCTCTGTCGCTTCCGGATTCACCTAGGCACGAGAGGGGACTGCCCGTCGCCCGCTGGGGACGGGGGTGAAACCTGAGGTGTGGTGTGCTTGGCTAGAGGGGGTTATGCGAAGGGTCCTGTCACGGCCTCTTTCCGGTATGTCGTGGTGGCATGTCGGCGCACGGAAACGTGTCGTGGGGCTGTGTCTTGTGGGTACAGTTGTACACCTCTGATCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGGGCGGTCAACCAGATTCACCGTGATTAGTCTCACCCTAGTGTAATCTGTTGAACTTGGATAGTTTAGGTGGATGGTTGGGCCTGTCGCAACGTGGGTTAGCGTTGGACAGCGGATGTTTAATACTGCTTAATTATTACAACTGTTTTCGCATTCAATTCCTGTTTATAAATGCCAGTATTTATGCAAATGAACCTGCTTAGCTATCCCTTGTTAAATCCCTGCATCATACCTCTATTCCGGTATGACTTGCTGAGTACAGTGGGTAGTACTCAGTCTTGCTCTACTTTTCCCCCCAACCTCAGAGTTCGAGTATGTGTCCGATGGCGGGTTTTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATGCCTGTGGAGTGGTGTTCCCGCTGCAGTTCTAGTCAAGGATTAGCTCCAGTTATCTTTTGTTTTCCGCTGCATTCCTGTAAGACTTTTATAATGTTTGTAAGACGTGGATCTGTATGTCAACATTGTCGTTTGTGTACCCCGGCTGGTCCTGGACGGGGGTTTTAATACACATTCTGCTTGGAATTCTATTCGGGAATTTCTGGGCGTGACA