Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: ZS97RS3_IR64_OTH1208420

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os XI-1A: Zhenshan 97 | ZS97RS3

Os XI-1B1: IR 64 | OsIR64RS1

Chr12

8984909

8984916

SV Length:

Query Start:

Query End:

Allele sv Count:

410 bp

9033697

9034106

21

Gene_id	Chromosome	Start	End
OsIR64_12g0008760	Chr12	9031300	9039444

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
ZS97RS3_117425_OTH1212900	Chr12	8984909	8984916	9276571	9276980	410
ZS97RS3_125827_OTH1210000	Chr12	8984909	8984916	9127621	9128030	410
ZS97RS3_127564_OTH1210760	Chr12	8984909	8984916	9067564	9067973	410
ZS97RS3_127652_OTH1212090	Chr12	8984909	8984916	9150738	9151147	410
ZS97RS3_132278_OTH1216220	Chr12	8984909	8984916	9728101	9728493	393
ZS97RS3_132424_OTH1209640	Chr12	8984909	8984916	9106270	9106679	410
ZS97RS3_Basmati1_OTH1214550	Chr12	8984909	8984916	9871355	9871764	410
ZS97RS3_CN1_OTH1208260	Chr12	8984909	8984916	9110220	9110629	410
ZS97RS3_D62_OTH1209220	Chr12	8984909	8984916	9218364	9218773	410
ZS97RS3_FS32_OTH1209080	Chr12	8984909	8984916	9144317	9144726	410
ZS97RS3_G8_OTH1208240	Chr12	8984909	8984916	9186868	9187277	410
ZS97RS3_HZ_OTH1209230	Chr12	8984909	8984916	9071107	9071516	410
ZS97RS3_IR64_OTH1208420	Chr12	8984909	8984916	9033697	9034106	410
ZS97RS3_J4155_OTH1209810	Chr12	8984909	8984916	9308964	9309373	410
ZS97RS3_J4155S_OTH1210220	Chr12	8984909	8984916	9276470	9276879	410
ZS97RS3_NamRoo_OTH1215490	Chr12	8984909	8984916	9320625	9321017	393
ZS97RS3_R527_OTH1208180	Chr12	8984909	8984916	8963016	8963425	410
ZS97RS3_S548_OTH1208560	Chr12	8984909	8984916	9191126	9191535	410
ZS97RS3_TM_OTH1210620	Chr12	8984909	8984916	9112573	9112982	410
ZS97RS3_WSSM_OTH1209560	Chr12	8984909	8984916	9011596	9012005	410
ZS97RS3_Y58S_OTH1209940	Chr12	8984909	8984916	9270237	9270646	410

>ZS97RS3_IR64_OTH1208420
GGCCTGTTTGGTTGGGGGGAGTTTTTAGAAGGGATTGGGAGTTTAGAGGGTTGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGAATGGGGATGGGGAATTGAGCAAGGAACTCCTTCCTTTTCAACATCTGGGTAGGGGCAGGTAATTGGGAGGGAAGTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTATCAATTTCCATCACCTCTACCAAACAAGATATTAAGATTAAAAATCAAATTCCCATCTTAATCTCATCATCAATTTCCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGGAGATACCATGAGGTACGAGGTACCATGAGG