Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: ZS97RS3_IR64_DEL1228010

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1A: Zhenshan 97 | ZS97RS3

Os XI-1B1: IR 64 | OsIR64RS1

Chr12

19323285

19324271

SV Length:

Query Start:

Query End:

Allele sv Count:

985 bp

7644795

7645779

12 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
ZS97RS3_127742_DEL1230410	Chr12	19323285	19324274	11855313	11856303	991
ZS97RS3_CN1_DEL1227520	Chr12	19323285	19324274	5531435	5532409	975
ZS97RS3_D62_DEL1227590	Chr12	19323285	19323786	20798012	20798513	502
ZS97RS3_FH838_DEL1228290	Chr12	19323285	19324274	5548416	5549405	990
ZS97RS3_G630_DEL1231350	Chr12	19323285	19323786	20906112	20906613	502
ZS97RS3_IR64_DEL1228010	Chr12	19323285	19324271	7644795	7645779	985
ZS97RS3_R527_DEL1227810	Chr12	19323285	19323786	20246005	20246506	502
ZS97RS3_R9311_DEL1229950	Chr12	19323285	19324274	11943381	11944371	991
ZS97RS3_S548_DEL1229310	Chr12	19323285	19323786	20587707	20588208	502
ZS97RS3_Y3551_DEL1228220	Chr12	19323285	19324274	5548739	5549728	990
ZS97RS3_OglaRS2_DEL1251500	Chr12	19323285	19324274	6950696	6951685	990
ZS97RS3_MH63RS3_DEL1228340	Chr12	19323285	19324274	5551981	5552970	990

>ZS97RS3_IR64_DEL1228010
AGTGTTTGCTATGGTTGAAGATCTTAAAGTAGTTTTTGGAAAGGGGCCTTGCAGCCAGCCTATAGAGAGCGAAGATGGTCACGCGGCGATGTGGAAAAAAAACTCCATATTTTGGGAGTTACCCTATTGGGAATTCTTGGACGTCCGCCACGCAATCGACGTGATGCACCTCACTAAGAAACTTTGCGTAAACCTTCTTGGCTTCCTAGGTGTATATGGAAAGTCGAAAGATACACTGGAAGCTCGTAATGATCTGAAGCATATGGAACAACGCGGCGACCTTCACCCGGAACCACAGGAGAAAGGCAGCCATTACTTGAGTCTAGCCAGCTACACTCTTAGCAAGGCAGAGAAAGAAAGTATGTTCAATGCTTGGAGAGCATCAAGGTACCGTCTGGATACTCCACGAATATAAAGCGAATAATAAGCACGAAGGAGAAGAAGTTCACAAACCTAAAGTCTCATGACTATCACATGTTGATGGCACAGCTGCTACCAGTTATAATAAGGGGTATCCTCCCAGACAATGTCCGGGCAACAATAACAAGGCTATGTTCTTTCATGAACGCAATTTCGCAGAAGGTCATCGATCCGGATAGGTTTGATGCCCTTCAGAATGATGTGGTGCAATGTCTTGTCAGCTTTGAGTTGATATTTCCACCTTCATTTTTCAATATAATGACGCATCTGCTTTCTCACCTAGTGAAAGAGATTGGTATTCTCGGGCCTGCGTTCCTACACAACATGTTTCCTTTCGAGTGGTACATGGGCGTTCTGAAGAAGTATGTTCGTAACCGTGCTCGTCCAGAGGCAAGCATCGCCAAGGGGTATGGAAAGAGGAGGTCATTGAATTCTGCGTAGAATTTATTGAAGACCTTCGCCCAATCGGGGTACCTGAATCACGCCATGAAGGGAGACTACGGGGAAAGGGGACTCTCGGAAGGAAAGCAATAATGACGGTAGACAACAATTTATTCCGTAAAGC