Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: ZS97RS3_HZ_INS1209240

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-1A: Zhenshan 97 | ZS97RS3

Os XI-adm: Huazhan | HZ

Chr12

8986659

SV Length:

Query Start:

Query End:

Allele sv Count:

120 bp

9073289

9073408

39

Gene_id	Chromosome	Start	End
OsHZ_12g0098700	Chr12	9068993	9074812

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
ZS97RS3_02428_INS1218030	Chr12	8986659	8986659	9241274	9241393	120
ZS97RS3_117425_INS1212910	Chr12	8986659	8986659	9278722	9278839	118
ZS97RS3_125827_INS1210010	Chr12	8986659	8986659	9129776	9129895	120
ZS97RS3_127564_INS1210770	Chr12	8986659	8986659	9069746	9069865	120
ZS97RS3_127652_INS1212100	Chr12	8986659	8986659	9152889	9153006	118
ZS97RS3_127742_INS1207010	Chr12	8986659	8986659	8985893	8986012	120
ZS97RS3_128077_INS1216800	Chr12	8986659	8986659	9162612	9162731	120
ZS97RS3_132278_INS1216240	Chr12	8986659	8986659	9729833	9729952	120
ZS97RS3_132424_INS1209650	Chr12	8986659	8986659	9108452	9108571	120
ZS97RS3_Basmati1_INS1214560	Chr12	8986659	8986659	9873506	9873623	118
ZS97RS3_CN1_INS1208270	Chr12	8986659	8986659	9112402	9112521	120
ZS97RS3_D62_INS1209230	Chr12	8986659	8986659	9220546	9220665	120
ZS97RS3_DHX2_INS1217840	Chr12	8986659	8986659	9228198	9228317	120
ZS97RS3_FH838_INS1207100	Chr12	8986659	8986659	8925854	8925973	120
ZS97RS3_FS32_INS1209090	Chr12	8986659	8986659	9146499	9146618	120
ZS97RS3_G630_INS1210020	Chr12	8986659	8986659	9049465	9049584	120
ZS97RS3_G8_INS1208250	Chr12	8986659	8986659	9189050	9189169	120
ZS97RS3_HZ_INS1209240	Chr12	8986659	8986659	9073289	9073408	120
ZS97RS3_II32_INS1206290	Chr12	8986659	8986659	8971710	8971829	120
ZS97RS3_IR64_INS1208430	Chr12	8986659	8986659	9035879	9035998	120
ZS97RS3_J4155_INS1209820	Chr12	8986659	8986659	9311146	9311265	120
ZS97RS3_J4155S_INS1210230	Chr12	8986659	8986659	9278652	9278771	120
ZS97RS3_Kosh_INS1217960	Chr12	8986659	8986659	9198652	9198771	120
ZS97RS3_KY131_INS1217550	Chr12	8986659	8986659	9089299	9089418	120
ZS97RS3_Lemont_INS1217620	Chr12	8986659	8986659	9279331	9279450	120
ZS97RS3_NamRoo_INS1215510	Chr12	8986659	8986659	9322357	9322476	120
ZS97RS3_Nipponbare_INS1217610	Chr12	8986659	8986659	9808874	9808993	120
ZS97RS3_R498_INS1208430	Chr12	8986659	8986659	8671691	8671808	118
ZS97RS3_R527_INS1208190	Chr12	8986659	8986659	8965198	8965317	120
ZS97RS3_R9311_INS1207080	Chr12	8986659	8986659	9074666	9074785	120
ZS97RS3_S548_INS1208570	Chr12	8986659	8986659	9193308	9193427	120
ZS97RS3_TM_INS1210630	Chr12	8986659	8986659	9114755	9114874	120
ZS97RS3_Tumba_INS1206920	Chr12	8986659	8986659	9378226	9378345	120
ZS97RS3_WSSM_INS1209570	Chr12	8986659	8986659	9013778	9013897	120
ZS97RS3_Y3551_INS1206950	Chr12	8986659	8986659	8813720	8813839	120
ZS97RS3_Y58S_INS1209950	Chr12	8986659	8986659	9272419	9272538	120
ZS97RS3_ZH11_INS1218040	Chr12	8986659	8986659	9160219	9160338	120
ZS97RS3_OglaRS2_INS1220390	Chr12	8986659	8986659	8571693	8571812	120
ZS97RS3_MH63RS3_INS1207030	Chr12	8986659	8986659	8817754	8817873	120

>ZS97RS3_HZ_INS1209240
AAATGCACACAAACAGGTGGCGCATAGTAATAGACACACATACAGGGGCATCAGTTTTGCAATCCAGTGCACTAGAATTGACTGATAGATATTTTACATCGGATTAACATAGCATACATT