Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: XL628S_132278_OTH1129250

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os XI-adm: Xiangling628S | XL628S

Os GJ-subtrp: CHAO MEO | Os132278RS1

Chr11

13172611

13172616

SV Length:

Query Start:

Query End:

Allele sv Count:

1446 bp

11976570

11975125

11

Gene_id	Chromosome	Start	End
OsCMeo_11g0011600	Chr11	11969955	11977317

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
XL628S_02428_OTH1122300	Chr11	13172611	13172616	12177718	12176306	1413
XL628S_117425_OTH1131540	Chr11	13172611	13172616	11733360	11734720	1361
XL628S_128077_OTH1124270	Chr11	13172611	13172616	12257012	12255567	1446
XL628S_132278_OTH1129250	Chr11	13172611	13172616	11976570	11975125	1446
XL628S_Azucena_OTH1133990	Chr11	13172611	13172616	12236940	12238418	1479
XL628S_Basmati1_OTH1132400	Chr11	13172611	13172616	12486946	12488415	1470
XL628S_D62_OTH1113060	Chr11	13172611	13172616	12467715	12466271	1445
XL628S_DHX2_OTH1127430	Chr11	13172611	13172616	11901281	11899869	1413
XL628S_FS32_OTH1112390	Chr11	13172611	13172616	12633604	12632093	1512
XL628S_Lemont_OTH1132610	Chr11	13172611	13172616	12292012	12290601	1412
XL628S_ZH11_OTH1127580	Chr11	13172611	13172616	12114519	12113251	1269

>XL628S_132278_OTH1129250
TATCTTCAGGACCTAAGCACACTACCGCCTAAAATATATTGGGGCAATTGTGTTTCTGCCCTTACTTTACATCTCAATTGTGATTTTACCCCTGGTTTTTAGGGTTTGTGATTTTGCCCCTACTTTTTTGAAACGAAGCAGCTGCCTACCCCTAGTCTGTTAACTGATGGTAACGGTGTTAAATGTGTGGTGAATGGACAAATATACCCCTGGACATGTTTTGGCTTGCACAGGATGCATGTTTCAAGTTAATTTTGATCAAATTTCATATGGGACCTAAATGTTCACAAATTTTGTAAAAGTTGACAGAACACAATATTTTGATAGAATTTTCGCAATAATTTGAACAAAACGATGTCAAAACACAATATTTTTGACAATTTTGACAGAAATTCATCAATAATTTGAACACAAATTATAGAAGATAATAGCACACTATCAAGGACAAAATTTCAGCAATAATTTCGACACAATTTCAATAGATACTTCCAACATATCACATATAACATGTGCTAGCATCACAAAGTAGCACAATTCTGAACAGCGCTGGCTAGCTCGCTGGCTGCGGCGCCGCCGGCCGTGGCGTCTCCCTGCACGTGCAACACCACGTGGCCACGCCTACGGAGCCGCCACTCCTCAGCCGCGGGGCCGCCGGCCGCCGCGTCTCCTGCGCGTGCAACGCCGCGGGGCCGCGCCGACGGAGCCGCCGCGCCGACGCGCCGACGCGCCGACGGAGCGCCGTTCCCTGCGCTTGCACGCCGCGCCGCAGTGCCGACGGAGCCGCCGCTCCGCGGGGCCGCCGAGCCGACGGAGCCGCCGCGCCGACGCGCCGACGCGCCGACGGAGCCGCCGTTCCCTGCGCTTGCACGCCGCGCCGCAGTGCCGACGGAGCCGCCGCTCCGCGGGGCCGCCGCGCCGACGGAGCCGCCGCTCCGCGGGGCCGCCGCGCCGACGGAGCCGCCGCTCCGCGGGGCCGCCGCGCCGACGGAGCCGCCGCCTCCGCGGGGCAGCCGCGCCGAAGCGGGGCCGCCGCGCCGACAGAGCCGCCGCTCCTCGGGGCCGCCGCGCCGCGCCTGCCCGCGCCGGACTCCCCCGCGCGCTCGCCCGAGCCGCCGCTCCTCCCTGCCGCACGCCGCCGCCTGTCGCGTAAGCCGCCGCCGCCACCGCTTACAACCCAGGAACTAGGGTTCTCGATTGGATCGGGAGGACAGAAGGTTTGGGGATTTGGTTGTTTCATTGAAGAAGGGTAGAATAGTCATTCACAAATTATAATAGCATTTTCTTTCTTCGTTTAATTCGGAAATCCCGGGCCCACCAAACAACCGTCCAAACCAGGGGCAGACGGCTGCTTCGTTTCAAAAAAGCAGGGGCAAAATCACAAACCCTAAAAACCAGGGGTAAAATCACAATTGAGATGTAAAGCAAGGGCAGAAACACAATTGCCCC