Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: XL628S_127742_OTH1120750

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os XI-adm: Xiangling628S | XL628S

Os XI-1B2: PR 106 | Os127742RS1

Chr11

13332078

13362977

SV Length:

Query Start:

Query End:

Allele sv Count:

23668 bp

13135521

13111854

9 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
XL628S_117534_OTH1116420	Chr11	13332078	13414199	12485312	12410414	74899
XL628S_127742_OTH1120750	Chr11	13332078	13362977	13135521	13111854	23668
XL628S_G630_OTH1115510	Chr11	13332078	13362977	13393924	13370258	23667
XL628S_R498_OTH1115940	Chr11	13332078	13362977	12887742	12864107	23636
XL628S_R9311_OTH1121950	Chr11	13332078	13362977	13066190	13042525	23666
XL628S_S548_OTH1123540	Chr11	13332078	13361445	13088296	13087234	1063
XL628S_Tumba_OTH1117000	Chr11	13332078	13362977	12920615	12893837	26779
XL628S_YX1_OTH1114030	Chr11	13332078	13361445	12656616	12655554	1063
XL628S_MH63RS3_OTH1123490	Chr11	13332078	13362977	13167082	13143415	23668

>XL628S_127742_OTH1120750
cgggctctgataccacctgatgcgaacccgctagggtttgtggcccgatctttcgatgagaggtaagggataactcgattagatgaagtcgacgttcacggcccgactacaactgtccaaagacgctgcgccttagcaaccgatacaccgtctccaatggtcgccgcgaacttgtggtgcgcgtcaacccggccacgagggcactcgtcctgcaagcaatcgaagaacaagcaagaacaagtaggacaagcactgaaattgctagataaagatgaaagtttcactatcaaacacaatatggtggggttccgattacaggcagacgggcggtttagccaacacgcgcgctgcgagccggtagcaagaagctaactctatcatcaaaacccgagaaaccctaaaggggtaactagctatatataggggtgggaggacgacctaggggtgcctagggtcgtgctccaccagcttggggcgcaccccacatgggccccacctgggccggggtcccaaatgaagttacaagcccataggcccattataggtgtcacagcaccttgtttcttcagttgctgccgactgagatggaatttggcaatgaggcttgatgcattggaaagaggactccgagagctgtccatcaagtactcacgggccgaaaacggaggtcgtatggagcttcggcggccgtttgaagtcagcagtgtagcaggtggccgaattggattttggcacttggaggactcgaacttgatatcttgttgttcatccatgatgtgagcaacggatgtatccgtagtagccatagtcacatcagtttgccaaggcatcgatacatccaacctccatttgggtgcttggttaagtcggtgtacatcaccattccgcttgcattggtaagatcttgtaagagcttggttaaaagcttgagtgtgtgtgatttttgagctaccactacctagtagttaataggaacgcacatatttttgtgtatgtttcttgttttctactaacaatggcagggatacgcaagataattggggatagctgtgctcaccatcgacatcttcgtcgagacatgaggagtgatcaacatgacctttatgaggtaagtgacgatgttctaggtaagatcaaatctgcactgccttatttcgagggaaactatgatcctcatgcttacattaattgggagctagcggttgatagtgaatttcaaaagcatgtcttgtctgagaaacaaaaggttatgtgtgcctctagtgttttagttaaacatgcttctaatgattggaaacatctttgtaggcataacaaaataccacaatcttggaaagacctaaaacgatattttagagatgtttatgttcccatgtattatgctgatattctgctcaacaaactgcaatgtttaaaacaagataccaaaagtgttacttcatactatcatgatatgcaagcttgtttattacgttgtggtttagatgaatgcgaagaagctaaagaattgaggtttttatttgggcttaacaaaaaaattcaggacatgcttgattgtcaaagatatacatctctttctcatttgttacaacttgcttgcaatgttgaaagtaaaatagaggaggacatgaagaagcaacatgctatgtttttgtcttctattactaaccatttgcaagaagtgcataatcatgaaaaggaggagagagacatgaaagagcctccagtcccattgatcacactcaaagtcgaggcacctccattatctgaagagggcatcaaaggtaaacttaatggtgctgaaattaataaaggtgagtgtgttgttaatgaattgaatttgtccacttttcatgctatagcagagcaaccattagtggaaccaactgctgagattcctttgtcacaagttgatttgtttgctgttccttgtgataaagaagagttatgcgataatgcttcacttatatccatgccacaactagtgaatgaacatgctattcctactgttaattcatactgcgctgattttaagcatgttgttcacattgctaatgaagtagaggagcgtgaattgagatcttctttaaatactttgggctatgttcagtttgatgatttttgtgagctcgataatttgaaggagaaattatttgctaagtctgatttgccatatccaaccaatgttatatttcacatctttggcgaatataatgatcttggaatatattttgtgcatagagtttacatctgctcggatttagaacctcctgtatatgtggataaaacatgcaagctagagaaaaatgttattgctaaccaaattgtctcgagtttgccttgttttgattggaagaaacaggttgttgtaaatggactaagcaaagagcaccatatggaaaaaccgaggacggttttctgtgaagaaggggaggatgatgtgaccatggctaccacggatgcaaccattgctcacatcatggatgaacaagaagatatcgagatcaagtactccaagtgctggaatccgattcggccacctactacactgctgacttcaaacggccaccgaatctgcatacgacctccgttttcagcccgtgagtacttgatggaaagcactcggagccctctttctaacggatccagcctcttctctaaattccatctcgtgtggccagaatcacaggaacaaggtgttgcgtcacctataatgggcctatgggcttgtaacttcatttgggaccccggcccaggtggggcccatgtggggtgcgccccaagctggtggagcacgaccctaggcacccctaggtcatcctcccacctctatatatagctagttaccccttcagggtttctcgggttttgttagattaaagtttagccattgctacttgcttgcagcgcgcgtgtcggctagaccgtccgtctgcttgttcttcggaaccccaacttatcatttgtattaaattcctatttgcaatatcagattgcttttatcttgttcttgcttgtttcttcgatttgcttgcaggaatagggttgatctgcaccggcaagatcagcaacccacggagaggtgtatcgatcgctaaggcgcaacacaacgtctcgtacggttgtagtcggatcgtcaacgtttctcccaaatcgtagttatcacaactcaccgaaagatcgggccaacaacagccttgagtgtcgagaggaactcagggttcatcatgccgatattggcattaattcaccaaagttcgccgcgcgaatcacgaagtgagtttttgccacgaacgcacccaatacactccaatatgtccaaaaatcatgtttcgtgctttttgtactttttcattccggtcaaaaacatcgcacccgtgtggggccatatatgccgatattggcattaattgacaaaagttcgccgcgcgaatcacgcagtgagtttttgcaaagaacgcacccaatacactccaatatgtccaaaaatcatgtttcgtgctttttgaactttttgttccggtcaaaaacatcgcacccgtgtggaccaatatatgccaatgttggcattagtctacaaaagttcgccgcgcgaatcacgaagtaagtttttgccacgaacgcacccaataaactccaatatgtccaaaaatcattttttggtgctttttgaacttttctattccggtcaaaaacatcgcacccgtgtggaccaatatatgccaatattggcattaattgacaaaagttcgccgtgcgaatcacgaagtgagtttttgcaaagaacgcaagcaatacactccaatatgtccaaaaatcatgttttggggctttttgaactttttcattctcgtcaaaaacatcgcacccatgtggaccaatatttcacaaaagttcgccgcgcgaatcacgaagtgagtttttgccacgaacgcacccaatacactccaatctgtccaaaaatcttgttttcgtgctttttgaactttttcattccggtcaaaagcatcgcacccgtgtggggccatatatgccgatattggcattaattgaccaaagttcgccgcgcgaatcacgaagttagtttttgccacgaacgcacccaatacactccaatatgtccaaaaatcatgtttcgtgctttttgtactttttcattccggtcaaaaacatcgcacccgtgtggggccatatatgctgatattggcattaattgaccaaagttcgccgcgcgaatcacgaagtgagtttttgcaaagaacgcaagcaatacactccaacatttccaaaaatcattttttcgtgctttttgaactttttcattccggtcaaaaacatcgcacccgtgtggaccaatatatgccaatattggcattaattgacaaaagttcgccgcacgtatcatgaagtgagtttttgcaaagaacgcaagcaatacactccaataattccaaaaatcatgttatgggtgtttttgaacattttcattccagtcaaaaacatcgcacccgtgtggaccaatatatgccaataatggcattaattgtcacaaattcgtcgcgcgtatcacgaagtgagtttttgccaagaacgcacccaatacactccaatgtgcccaaaaataatgttttggttttttttcaactttttcattccggccaaaaacatcgcacccgtgtgggccaatatattccaatattggcattaattgacaaaagtttgccgcgcgtatcactaagtgagtttttgccaagagcgcacccaatacactccaatgtgtccaaaaatcatgttttagttttttttgaactttttcattccggccaaaaacatcgcacctgtgtggaccaatatatgccaatattaacattaattgacaaaagttcgctgcgcgaatcacgaagtgagtttttgcaaagaacgcaagcaatacactccaatatttccaaaaatcatgttttggggctttttgaactttttcattccggtcaaaaacatca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