Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: XL628S_127742_INS1120610

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-adm: Xiangling628S | XL628S

Os XI-1B2: PR 106 | Os127742RS1

Chr11

13239173

13239186

SV Length:

Query Start:

Query End:

Allele sv Count:

17046 bp

13277724

13260679

10 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
XL628S_117534_INS1116300	Chr11	13239173	13239186	12625428	12608370	17059
XL628S_127742_INS1120610	Chr11	13239173	13239186	13277724	13260679	17046
XL628S_G630_INS1115380	Chr11	13239173	13239186	13536118	13519075	17044
XL628S_R498_INS1115820	Chr11	13239173	13239186	13029282	13012239	17044
XL628S_R527_INS1125240	Chr11	13239173	13239186	13324520	13307475	17046
XL628S_R9311_INS1121840	Chr11	13239173	13239186	13207762	13190747	17016
XL628S_S548_INS1123420	Chr11	13239173	13239186	13230495	13213450	17046
XL628S_Tumba_INS1116890	Chr11	13239173	13239186	13061669	13044633	17037
XL628S_YX1_INS1113910	Chr11	13239173	13239186	12800452	12783415	17038
XL628S_MH63RS3_INS1123390	Chr11	13239173	13239186	13309285	13292240	17046

>XL628S_127742_INS1120610
tggtggggcactgcgtgtcacgcccagaaattcccgaatagaattccaggcagaatgtgcattaaaatccccgtccaggaccagccggggtacacaaacgacaatgttgacatacagatccacgtcttacaaacatcataagagtcttacagaaatgcagcggaaaacaaaagaaactggagctaagccttgactaaactgcagcaggaacaccactccacaggcatcctcgacggcacggacgaagcctactcctcggagaaaccttcatctgacccgtactcaaactctggggttgggggaaaagtagagcaagactgagtactacccactgtactcagcaagtcataccggaatagaggtatgatgcagggaatcatcaaagaaaagctaaagtggttcatttgcataaagcgagcattgataaacagagattgaaagatttaaacagttgtaataagtaattaagcagtattaatcatccactgtccaacgctacaccacgttgcaacaggcccaaccatccacctaaactatccaaattaaaggattacactaaagtgagactaatcacggtgaatctggttgaccgcccataaccgtgggcacggctattcgaatagttttactctgatcagaggtgtacaactgtacccacaagacacagccccacgacacgtttccgtgcgccgacatgccaccacgacataccggaaagaggccgtgacaggacccttcgcataaccccctctagccaagcacaccacacctcaggtttcacccccgtccccagcaggcgacgggcagtcccctctcgtgcctaggtgaatccggaagcgacagaggccgtcgcagggcccgccccgctccatcacgcccacccttgcctggatgcgtcgactagaggaaagctacactacaagcccagccgttgcccacgctggcttgtggtaagtacgataagttcttccagggcatcccgcgaaccggtccttaactgccatgggtgcgaccagcaaaaccatgcacccacagcccaccatgtggttcattttaattaaccaacaccagagcggtggtactaaaccaacattatcatatagacttatagtttaggttttatatgagattccccattgtgtgctagttgaactaggcatggctaagcaattcctagtcctaactctaatcatgttataacccaagctaacaaaggagcatggtatcaaaattatggctgtaacagtaggtaaccatcccctagtgatattataaaacaatgcagtatttgaaaggaaacagtagagcatttgcaatataggagcaatatgttcaagtgacaagcatgacttgccttgctctgctgctggagggacttcggcgactatctcgaagtacaccggagcgtcggagggatcggaatctagcgacatacaaagcaaacattgcaaacaggctataagactactgaaacagagaacaaaaccatttttaatggattctacacatttttcttgatttactgagacttgaatggacttaaacggagctcggatgaattagctatgaattttagaagattcactgtgtttattactataaaagaaatccttaaataaattattgcgcaataaactccagggctgacgtcagcgcggggcggcgcggcgccgacaagcggggcccaccggtcagcgacacggggagagagagaaggggcggcggctcgcgggcccaccggtcagcggcacgggggaaaaggatggggcggcggcgccacgtggcggccgaaccgacggccccgatctacccaagggtagatcggacggcggcgggacctcgcggccggggcgcgcgggcgcggcgcgagacggcggcgaccatggcgccggcggcgcggcgctcacacggcggcgcgcgcatgcggcagcggcgcaaggcgacgatcgacggcgaccgaccggcggcggagagcggcggctagaggaggagcggcggctacgcggctaagcggcgacgcggcggctaagcggtgcgggagagagggaaaacgaggagggggacctcaccgacaccgatcgacgacggcgggcgacggaggatgacggcgacggcgggacgagctccggagccccctaacgaacaaaaggagaggggttagagggagcgaggagagtgcgagagagcgagagcgccggccgaaggcggcggccatggcgccactcaccggcacacgacggggacggctctccggcgacggacctcgacgaaagaggggtggacggggtagatcttgaccccgcgaacctaacggcggcgtcggcgcaagacggcggcgagcctagcggcggctagcggcggccggagtagcaaaagcggcggcggcgggtggttgcacggcgcggaggcgatggggagcacgggagggatcggcgaaatggggaaaaagagagagagggcggcggcgatgcttaaaaagggggagaggggtccggacgtggccgggagcggcgggaatcgccggccgacgtgggggagtggggaggagagagaggcgggattcgtttttcgaatcccggccatctcgggcgcgggcgcgaatgggagagagaggggaaagggcgcgggggatgcggcgcacgcgcgggcgtggccgacgtggcccgggagcggcggagacgtgggcacaacggccgttacggcgcggcggcgcgggcgggatcggcgggaggtgggggaaggacccgacaggtgggccccacctgtcggcgaccccgagagaggaggcgggcggccggctgtcgggctgggcctcggcctgcggccggcccagcaaggaggagggggaggaaagagaggggaaatgggccgacggcccatttaaccaaaaggaggaaaacgagggaaaaagaaaaagaaaaaggaaaaaggattttccttggaattaaaaattgcacttgctcaattttaattggttaaaattatttctagagctctgaaaattccactaaaaatcctgttaatgaatttcgacatgtagaactcaagaaaaattccacatgtcaattccgattattatttgcattattttcttagggttttctcctgatttctccagcattttcttagggtcttttataaattacaatttttggcttaggaggagaactacagggtgtgacaaacctacccccccttaaacggaatctcggccccgagattcggaggagctggtgaagaggtccgggtgggcggctttcaactcatcttccctttcccaggttgcttcctcttcggaatgatgactccactgaactcggcaaaacctggtgaccttgtttctggtcctcctttcgctgatatcaagtatgcgaaccgtcttctccacataggtcaggtcctcctggatatcgatgtgttccgaatcagcctgttcctcaggtacccttaagcacttctttagttgagaaacgtggaacacgtcatggatgccgatcatgttggatggaagttctagctgataagcaacttctccccttcgttccaaaattttgtatggtcccacgaagcgtggtgccaacttgcctttcgtctgaaaacggtgtactccccggagcggagtgacacgaaggtacacgtaatctcctgcctcgaaagtgagctcccttcgacggttatccgcgtagctcttctgtcgagactgggcaatcctcaacctttccctgatgattctgactttctcttctgcttccgctaatacttctgttccgaacagttgacgttcgcccgtctgatcccagaagagaggtgtgcggcacttccggccgtataacgcttcgaacggtgccatctgtagactggcctggtagctgttgttgtacgagaattccgcatatggtaagcttttatcccaagccccaccaaaatcaagagcgcaagctctcagcatatcctccaagatttgattgactcgctcggtctgaccatcagtttgcgggtgataggccgtgctgaaatttaaacgggtccccaactcttcctgcagtttctgccaaaattttgaggtgaactgactacctcggtcggatactatcttcctgggtaccccatgcaaacacatgatccttgcgaggtacaactctgccaatctctttcccgtataggtggtatgtactggtataaagtgagccaccttggtgagtcgatccacgactacccagattgaatcatgtcccgatgatgtccggggcagtcccgtgataaagtccattccaatctcctcccacttccattccgggatttgaagaggttggagtaaacctgctggtctttggtgctctgccttcacttgttggcaaacatcgcagagtgcgacgaattcagctatttctctcctcatgctgacccaccaaaacttttctttgaggtcttgatacattttagtactgcctgggtgaatggagtactgggtctgatgagcttcggtgagtatcagatccttcaattccttgtcgtccggtacacacaatctttctcccatccagattgtgccatgctcatcctcaaggaaatcccgagcctttccgactctcatgttctttttcagttctgctatttccggatcatttacttgagcggctctaacttgatccacgagcgtaggccgtgcctccagagcggctacaaacccgtgttcaacaactcccatgttgagatgttcaagctcctgccgcaattcctcacacatgctctcgatgcatagagcagtgcagtaacttttccggcttaaagcgtctgccaccacattggccttacccgggtggtagtgaatactcatgtcatagtctttgattagctccaaccatcttcgttgtcgaaggtttaggtccggttgggtgacttttatggtccgtatatacttcgcagcggttgccgatcagatagtgcctccagattttcaaagcatgaaccactgctgccaattctaagtcatgagttgg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