Variation ID: XL628S_117425_DEL0429840

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os XI-adm: Xiangling628S | XL628S
Os cB: ARC 10497 | Os117425RS1
Chr04
14058327
14060234
SV Length:
Query Start:
Query End:
Allele sv Count:
1901 bp
26494687
26496587
39
Gene_id Chromosome Start End
OsARC_04g0022530 Chr04 26494432 26495579
SV_id Chromosome ref_start ref_end query_start query_end length
XL628S_02428_DEL0437340 Chr04 14058327 14060234 28075461 28077361 1901
XL628S_117425_DEL0429840 Chr04 14058327 14060234 26494687 26496587 1901
XL628S_125619_DEL0424100 Chr04 14058327 14060234 28681137 28683037 1901
XL628S_125827_DEL0422470 Chr04 14058327 14060286 29661846 29663796 1951
XL628S_127518_DEL0421720 Chr04 14058327 14060286 28884887 28886837 1951
XL628S_127564_DEL0421760 Chr04 14058327 14060286 29161011 29162961 1951
XL628S_127742_DEL0419040 Chr04 14058327 14060286 28914733 28916670 1938
XL628S_128077_DEL0435150 Chr04 14058327 14060234 26354606 26356506 1901
XL628S_132278_DEL0437270 Chr04 14058327 14060234 27559521 27561421 1901
XL628S_Azucena_DEL0437080 Chr04 14058327 14060234 26276915 26278815 1901
XL628S_Basmati1_DEL0435350 Chr04 14058327 14060234 26044443 26046343 1901
XL628S_CN1_DEL0417530 Chr04 14058327 14060286 28311983 28313933 1951
XL628S_D62_DEL0422180 Chr04 14058327 14060286 28344540 28346490 1951
XL628S_DHX2_DEL0438240 Chr04 14058327 14060234 26947672 26949572 1901
XL628S_G630_DEL0416930 Chr04 14058327 14060286 28926458 28928408 1951
XL628S_G8_DEL0415390 Chr04 14058327 14060286 28623945 28625882 1938
XL628S_HZ_DEL0419200 Chr04 14058327 14060286 29086400 29088337 1938
XL628S_IR64_DEL0421760 Chr04 14058327 14060286 27272258 27274195 1938
XL628S_J4155_DEL0434740 Chr04 14058327 14060234 27223923 27225823 1901
XL628S_J4155S_DEL0436000 Chr04 14058327 14060234 27791828 27793728 1901
XL628S_Kosh_DEL0438910 Chr04 14058327 14060234 27744207 27746107 1901
XL628S_KY131_DEL0438330 Chr04 14058327 14060234 28172783 28174683 1901
XL628S_Lemont_DEL0437430 Chr04 14058327 14060234 27076944 27078844 1901
XL628S_LJ_DEL0439590 Chr04 14058327 14060234 27075455 27077355 1901
XL628S_NamRoo_DEL0438250 Chr04 14058327 14060234 28031648 28033548 1901
XL628S_Nipponbare_DEL0438850 Chr04 14058327 14060234 27686717 27688617 1901
XL628S_R498_DEL0427150 Chr04 14058327 14060286 27806917 27808854 1938
XL628S_R527_DEL0428490 Chr04 14058327 14060286 28387578 28389515 1938
XL628S_R9311_DEL0421880 Chr04 14058327 14060286 28995439 28997376 1938
XL628S_S548_DEL0428140 Chr04 14058327 14060286 27868635 27870572 1938
XL628S_TM_DEL0418600 Chr04 14058327 14060286 27033252 27035202 1951
XL628S_Tumba_DEL0421980 Chr04 14058327 14060286 29354326 29356276 1951
XL628S_WSSM_DEL0419170 Chr04 14058327 14060286 28475655 28477592 1938
XL628S_Y3551_DEL0429640 Chr04 14058327 14060286 29148022 29149972 1951
XL628S_Y58S_DEL0427520 Chr04 14058327 14060234 28882633 28884533 1901
XL628S_YX1_DEL0425500 Chr04 14058327 14060286 27370313 27372250 1938
XL628S_ZH11_DEL0438520 Chr04 14058327 14060234 27233580 27235480 1901
XL628S_OglaRS2_DEL0445040 Chr04 14058327 14060286 24355235 24357160 1926
XL628S_MH63RS3_DEL0429600 Chr04 14058327 14060286 29407706 29409656 1951

>XL628S_117425_DEL0429840
CAAGGTCCAAGTGTACTGCTTCGAGGTCCTTTTATTCAATCAGTGCTTTTCGAGTTTTATGATTTATTCATGACAATACCAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGGTAAACCAAATTCTTTTTCCTACTTATTCATGTCCTTTCTTCTTTGTTTCGAACTAAAATGGTGCTTACAAACCAAAAACACGGGAAATATTATTGTAGATGATGATGAAGTTGCTAAGATATATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTGATTATTTTCATATAAATAATTAATAAGTCCAAATGTACAGAATGTTAGGTACTGCTAGTCAGATGATGTGCTTGTCAAACTTCCAATTTCAGGTCAATATGGACCTCGCACCTTCCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTGTAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGTATGGTTCACAAATCTGACTGCCCTGTATTTGCATTTGTTTATACATAAATGTCCTGAGTCTAAATGTCTTGTTTATATTTTTTAGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAGTGTAATGGATGAAGAACTTTGATGTGCCCCCTCATAATGTAGTAGTATGCCCCCTCCTAGTGTAGTATCTGCACCTTATGTAATGGATACTATGCAGCAGCTTTTGTTCAACTTTAATGGAGGCCATGCAGCAGCTTATGTTCTAAGTTAAGACAATGTTATTCTGATGTAATATATTTATCATCTATTTCCCTAAAATTACCTAGTTGTTTGCATCACTTCAAATCTGATATGGCAAGTGTACAGTTTTTATGCTACTGGAGTTGTTGATTGTTGTTGGAATCACTGCTACAAAATTAAAATGGCTGCCCGTTCTGTTCTGAAAACTAAAAACATGCTACGGAAGCTTCATCTTGATTGTTGCTGGAATACTATACTTAATTGGGCTGAAAACACACAGAACAGAAGCAGCTGGCATGAATACAAATGAGTTTAAGAAACTTTAGTTGGCTGGAATACAAATGTAAGGTGCACACACAAGAGCGTCGGACGATGCAGGAACAACAGAGACCACAACAGCAGGAAGCGACGCCCGAGTATTCCGGCTGGATGCGACGGTGGATGCGGCAGGGTGGAGGCGGCGATTTTGATGCGCCTGGCGTCGTCGTGGATGAGTCGATGCGCCTGCGGATGGCTGGATGAGACAACGAGTTCTTGCGACGGCGGGATGGATGCGCCGGGGTGGAGGCTGCCGCTGTATGCGACGACGGGATGCGCCGCTATTGACGACGGGATGCGGGTTGGACGTCTGCCGCGGCGTCCTCGACGGCGGCAGACGCGTGTTCGACGCGCGGCCGCGGTGGCGTCGAGGGTACGTCGGCCGCGGGGGAATACCTGCGATGAGACGGCGGCTGCGGCGGACAAGATGAGACGCCGGCAACAGATATTGGCGCTTGGCGGCCGCCGCAGACTATTGGCTGGGATGGGCGGTGATTAACGCTACCCTAATTTGTTTAGCCCCATCATACCCTTCCTAAATCAACGGTCAGATTACATTGGTACCTCATG

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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