Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: WSSM_Y3551_DEL1222360

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

18069295

18070284

SV Length:

Query Start:

Query End:

Allele sv Count:

990 bp

5548739

5549728

13 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
WSSM_127742_DEL1222140	Chr12	18069295	18070284	11855313	11856303	991
WSSM_CN1_DEL1215880	Chr12	18069295	18070284	5531435	5532409	975
WSSM_D62_DEL1218090	Chr12	18069295	18069796	20798012	20798513	502
WSSM_FH838_DEL1222430	Chr12	18069295	18070284	5548416	5549405	990
WSSM_FS32_DEL1221580	Chr12	18069295	18070267	18439745	18440726	982
WSSM_G630_DEL1223650	Chr12	18069295	18069796	20906112	20906613	502
WSSM_IR64_DEL1213700	Chr12	18069295	18071766	7643089	7645779	2691
WSSM_R527_DEL1213500	Chr12	18069295	18069796	20246005	20246506	502
WSSM_R9311_DEL1223870	Chr12	18069295	18070284	11943381	11944371	991
WSSM_S548_DEL1213960	Chr12	18069295	18069796	20587707	20588208	502
WSSM_Y3551_DEL1222360	Chr12	18069295	18070284	5548739	5549728	990
WSSM_OglaRS2_DEL1247800	Chr12	18069295	18070284	6950696	6951685	990
WSSM_MH63RS3_DEL1222780	Chr12	18069295	18070284	5551981	5552970	990

>WSSM_Y3551_DEL1222360
GCTTTACGGAATAAATTGTTGTCTACCGTCATTATTGCTTTCCTTCCGAGAGTCCCCTTTCCCCGTAGTCTCCCTTCATGGCGTGATTCAGGTACCCTGATTGGGCGAAGGTCTTCAATAAATTCTATGCAGAATTCAATGACCTCCTCTGTTCCATACCCCTTGGCGATGCTTGCCTCTGGACGAGCACGGTTACGAACATACTTCTTCAGAACGCCCATGTACCTCTCGAAAGGAAACATGTTGTGTAGAAACACAGGCCCGAGAATACCGATCTCTTTCACTAGGTGACAAAGCAGATGCGTCATTATATTGAAAAATGAAGGTGGAAATATCAACTCAAAGCTGACAAGACATTGCACCACATCATTCTGAAGAGCTTCTAACCTATCCAGATCGATGATCTTCTGCGAAATTGCGTTCATGAAAGAACATAGCTTTGTTATTGTTGCCCGGACATTGTCTGGGAGGATACCCCTTATTATAACTGGTAGCAGTTGTGTCATCAACACGTGACAGTCATGAGACTTTAGGTTTGTGAACTTCTTCTCCTTCGTGCTTATTATTCGCTTTATATTCGTGGAGTATCCAGATGGTACCTTGATGCTCTCCAAGCATTGAAACATACTTTCCTCCTCTCCCTTGCTAAGAGTGTAACTGGCTGGACTCAAGTAATGGATGCCTTTCTCCTTTGGTTCCGGGTGAAGGTCACCACGTTGTTCCATATGCTTCAGATCATTACGTGCTTCCAGTGTATCTTTCGACTTTCCATATACACCTAGGAAGCCAAGAAGGTTTACGCAAAGGTTCTTAGTGAGGTGCATTACGTCGATTGCGTGGTGGACGTCCAAGAATTCCCAATAGGGTAACTTCCAAAATATGGAGTTTTTTTTCCACATCGCCGCGTGACCATCTTCGCTCTCTATAGGCTGGCTGCCAGGCCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACATTGTT