Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: WSSM_LJ_INS1120380

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Chr11

12758137

12762538

SV Length:

Query Start:

Query End:

Allele sv Count:

4376 bp

12409121

12413496

8 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
WSSM_117534_INS1121660	Chr11	12758137	12758926	12840498	12841288	791
WSSM_117534_INS1121660_1	Chr11	12758137	12762538	12370701	12375103	4403
WSSM_127742_INS1117850	Chr11	12758137	12758926	13781688	13782478	791
WSSM_D62_INS1114010	Chr11	12758137	12762538	13033525	13037918	4394
WSSM_KY131_INS1123190	Chr11	12758137	12762538	12485140	12489543	4404
WSSM_LJ_INS1120380	Chr11	12758137	12762538	12409121	12413496	4376
WSSM_R9311_INS1119850	Chr11	12758137	12758926	13862202	13862987	786
WSSM_MH63RS3_INS1120420	Chr11	12758137	12762538	13302702	13307106	4405

>WSSM_LJ_INS1120380
TGATGAACCCTGAGTTCCTCTCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACGATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTATCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGCAATCTGATATTGCAAATAGGAATTAATACAAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTATCAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGAGACGCAGCACCTTGCTTTTGTGATTGCGGCCAAACGAGATAGATTTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTACGGGCCCAAAACGGAGCACGTATGTAGATTTGGCGGCCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAGGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCATCCTCCCCTTCTTCACAGAAAACCGTCCTCGGTTTTTCCATATGGTGCTCTTCGCGCAGTCCACTGAAAACAACCTATTTCTTGCAATCAAAACAAGACAAACTGGAGACAATATGATTAGCAGTAACATGTCTCTCTAGCTTGCATATTTTATCCGGAACTACAAGATGTTCTAAATCTGAACAAATGTAAACTCTATGCACCAAAAAATTCCTCTATCATTATATTCGCCAAAGATATGAAAAATAGCATTAGTTGGACATGGCAAATCAGATTTAGCAAATAATTTCTCCTTCAAATTATCGAGCTCACAAAAATCATCAAACTGAACATAGCCCAATGTATTTAAAGAAGATTACAATTGAAGTTCATCATTCTCGCTGGACGTGTGAATAACATGCTTAAATTCAGTACATGGAGAATCAATATTAAAAGTAGCATGTTCATTCACTAGTTGTGGAATGGATATAAGTGAAGTACTATCGCACAACTCTTCTTTATCACAAGGAACAGAATGCAAACCAACCTGTGACAAAGGCAATTCAGAAGTAGGTTCCACTAAAGTTTGCTCTAGGTCAGCATGGAAAGTGGAAAAATGTAATTCATCAGAAGCATACTCACCTTGAGTAATTTCTGCACCATTTAATTTACTTTTATGCCCTCTTCAGATAATGTAGGTGCATCAGCCTTCTCCTCATTCGCGAGTGATGGAAGTGACATCTCAAACATATCGTTCTTCTCATTTGGGGATTGTTCTGAACTTCCTGCAAAACATCAGCGATAGGAGGCACACGCATAGCTTGTTGCTCCGTTGGGTTCTCCAAAATTTTGTGCTCAACATTGCAAGCAAGCATAAACATTGGCCTATATGATTATATGTCACATTAACAAGCCCAGCCTGAATATTGGAATTAAGCGCCTCTGAAAAATTCTAGTCATTGTGTTCTCATTAGATTCTTGTAAACCACTATAAGTGATACAAATTTTAAAATCATGAAAGTACTCCCTAACAGTTTTGTCACCTTGTTTTAGATGTTCAAATTTCTCAAGGAGAGCACGTCTATATGTATGAAAACACAAATCTTTTTCTATGTATTTTTGCATTCATCCCAAGTTTCAAGCTTATTTCCCACAGTATGCCACCCAAAAGATGCAGAACCGGTACACTTATTACTAGCAGCCTTAATCATTTGAGCATTAGAAAAATCATACTCATCAAATTGTTTTTCTACTGCTAGCTCCCAATTAATGTATGCAGCGGAATCATACTTTCCATCATAGACTGGGTAACTTACATGCAACTTGTGGCAAAATTATAGTCACACCTATGATCACGTGAAGAAGTCGTCATATCTCGGAAGGTGTAGATGTTGACGTTGAGCATGACCATCTTGTTTCCCCTTGCGCAATCCTGCCATGGTTAGCAGCAAACAGAAACATACACAAGATATATACACGCTCTTATCAACTACTAGGTACTGGCAGCTCAAATCTCACACACACTCAAGCTTTTTAACCAAGCTCTTACAAGATCTTACCAATGCAAGTGGAATGGTGATGTACACCGACTCAACCAAGCACCCCAATAGAGGTTGGATATATCGATGCCTCGGCAAACACTTGTTGTACGGCTGCTGCAATCAATCTGTGGAGCTCTGGGTAGGCTTAAATATGTAGCAAGGAATAGCAATGCTCAAATCAGAGAACGCAAAGTTGAATAATTGTTCAAAGTCAAGTATCGTGCTAGTCCTAGGCTAGAACGTACTAGAGACGCGAGCCTAGACACAAACATACCACAAGATAGCACTAGGAACAACTCATGCACAACTCTGATATATGAAGTTCAGCTCAACAAACAGTATTTTTCTCTTTCTTTCTTTCTTTCTTTCCTTCTTTTCTTTTTTTTTCTTTCCTTTTTTCTATTTTTTTTGTGCGGCTTTTTTTTCTTTTCTTTTTTTTTTTGCACTTTCTGCTTTTTTTTTCTCACTTTTTTCTTGATTTTTTACAAAAACTGACTCAAGGACCTTAATGTAAGGTTACAGGGACTCAAACGTAAATAAAAAATTTACAGGGACTCAAATGTAAAAGTCTAAACCCAAAATTAAAATTATACAAAAATGGAATGCTGAATTTATGCCGGTTCCGTTTTTCCAAACAGATCTCGAAACTGACACCAAACAAAAATTCGCCAAGGTGTTTGACACAACTCGGACCGTGAAAGAGAGGGAGGGAGTCGGACTCGGCCAAAGGGCCGTGGGACTCGGCCAGGAGGTGGAGTGGATGGCAGCCGAATTTGGTGTATGGGATAAAAAGGAAACTGATTTTTAACCAATCCAATCTACTATATCTTTCCAAAACAAACTTGACTACTTCCAAAATCAGATATGGTAATTCACCTTCCTCCTCTCGTGCACGACACAGGCACGGCCAAAACAAACACACACAAGGATCGGCAAACTCTAGATGCAACTCAAGAACTCCAAAACTAACCGACAGAAACTTCTGAAAACTACAAAATAGAATCGTGGCAGCGAGCCGATTCCGTTTTCGTAGGTCCCGACAACAACAGAGACACGGTGGCAGCGACGACTGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAACTAGACGCTAAGACCAGCAACACGACGTGACGATGCAACATAAAATTCAACAAAGCAAAACTGAAAAGAACAATGCAATGGCACAATAGGCTAGTAAATGATACGAATTTTTTTGTATGGCTATTTTCTGGTTATAGGAAGATAAAAACTCACCGAGCGACGAAAGCTCTGATACCACCTGATGAACCCTGAGTTCCTCTCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACGATCCGACTACAACCGTACGAGACGTTTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGAAATATGATATTGCAAATAGGAATTTAATACAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTATCAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGAGACGCAGCACCTTGCTTTTGTGATTGCGGCCAAACGAGATAGATTTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTGCATCAAGTACTCACGGGCCCAAAACGGAGCACGTATGTAGATTTGGCGGCCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAGGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGC