Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Tumba_127742_DEL1216220

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-3: Tumba | Tumba

Os XI-1B2: PR 106 | Os127742RS1

Chr12

18759894

18761274

SV Length:

Query Start:

Query End:

Allele sv Count:

1401 bp

7679659

7681059

16 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Tumba_117534_DEL1238930	Chr12	18759894	18761274	7472438	7473838	1401
Tumba_127742_DEL1216220	Chr12	18759894	18761274	7679659	7681059	1401
Tumba_Basmati1_DEL1238390	Chr12	18759894	18761274	7669262	7670662	1401
Tumba_DG_DEL1229780	Chr12	18759894	18761274	7693454	7694854	1401
Tumba_FH838_DEL1232310	Chr12	18759894	18761274	5547594	5548994	1401
Tumba_G46_DEL1229600	Chr12	18759894	18761274	7560944	7562344	1401
Tumba_II32_DEL1216030	Chr12	18759894	18761274	7667263	7668661	1399
Tumba_LK638S_DEL1229980	Chr12	18759894	18761274	7540557	7541957	1401
Tumba_R498_DEL1225910	Chr12	18759894	18761274	5562553	5563953	1401
Tumba_R9311_DEL1216470	Chr12	18759894	18761274	7768761	7770161	1401
Tumba_S548_DEL1231390	Chr12	18759894	18761274	7790049	7791449	1401
Tumba_XL628S_DEL1229890	Chr12	18759894	18761274	7532517	7533917	1401
Tumba_Y3551_DEL1232250	Chr12	18759894	18761274	5547917	5549317	1401
Tumba_YX1_DEL1223330	Chr12	18759894	18761274	8243282	8244682	1401
Tumba_ZS97RS3_DEL1229830	Chr12	18759894	18761274	7509843	7511243	1401
Tumba_MH63RS3_DEL1232550	Chr12	18759894	18761274	5551159	5552559	1401

>Tumba_127742_DEL1216220
gaatataaagcgaataataagcacgaaggagaagaagttcacaaacctaaagtctcatgactatcacatgttgatggcacagctgctaccagttataataaggggtatcctcccagacaatgtccgggcaacaataacaaggctatgttctttcatgaacgcaatttcgcagaaggtcatcgatccggataggtttgatgcccttcagaatgatgtggtgcaatgtcttgtcagctttgagttgatatttccaccttcatttttcaatataatgacgcatctgctttctcacctagtgaaagagattggtattctcgggcctgcgttcctacacaacatgtttcctttcgagtggtacatgggcgttctgaagaagtatgttcgtaaccgtgctcgtccagaggcaagcatcgccaaggggtatggaaagaggaggtcattgaattctgcgtagaatttattgaagaccttcgcccaatcggggtacctgaatcacgccatgaagggagactacggggaaaggggactctcggaaggaaagcaataatgacggtagacaacaatttattccgtaaagcctatttcacggttttacaaaaatcttcattggtggctccttacatcgaggagcacttggctctagttcgcgccagaaacatcggtaagtccgatgcatggattacacggcatcacattgatactttccccgcatggctgcgacaacatctcatgggtaacgaaacgattaaccagcaactggccttcctggtgaggggtccatctggctctatcacgacattccagggatatgagatcaatgggtacatattctacacaagagcccaagacatgaagagcacgaaccagaacagtgttgttcgtatcgatgccatgggacacgatggtacaactggcacatattacggtgccatcgaggaaatatgggaacttgactatggacctctcatggtccctctgttccggcgccaatggggtaggttgactggtagaggcgtaacgattgatgacagtgggatgacaacggttgaccttaacaaggttggatactcggacgaaccttttgtccttgccaatgatgtaatgcaagttttttacgtgaaggacatgtctagcaaaggaaagaagggcaaagggcctaacgagccgaagcgccacgtggttctcccaggcaaaagaaaaatcgtcggagtagaggacaagactgacgaggattacgatcagtttgatgggcaacccccctttcacggtgacggttgaccctagcatcctcctatcaaacgaagacaccccttactcacgtagcgatcacaaggaaggaacaatagtgaggagaaagtacgtgcggacaaccgtcaccgccgatcttatgccgtaattgtt