Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: TM_G630_TRA0131980

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

TRA

Chr01

43373559

43373794

SV Length:

Query Start:

Query End:

Allele sv Count:

237 bp

38274017

38274253

14

Gene_id	Chromosome	Start	End
OsG630G0101406600.01	Chr01	38265821	38275423

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
TM_125827_TRA0140050	Chr01	43373559	43373794	38390604	38390840	237
TM_127518_TRA0136600	Chr01	43373559	43373794	38360544	38360780	237
TM_127742_TRA0132140	Chr01	43373559	43373794	37861026	37861262	237
TM_132424_TRA0131330	Chr01	43373559	43373794	37981632	37981868	237
TM_FH838_TRA0131980	Chr01	43373559	43373794	38351261	38351497	237
TM_G630_TRA0131980	Chr01	43373559	43373794	38274017	38274253	237
TM_IR64_TRA0141990	Chr01	43373559	43373794	37907637	37907873	237
TM_J4155_TRA0135760	Chr01	43373559	43373794	38145236	38145472	237
TM_J4155S_TRA0136990	Chr01	43373559	43373794	38621817	38622053	237
TM_Lemont_TRA0153900	Chr01	43373559	43373794	37755494	37755730	237
TM_R527_TRA0132730	Chr01	43373559	43373794	37929114	37929350	237
TM_Y3551_TRA0132780	Chr01	43373559	43373794	37968484	37968720	237
TM_Y58S_TRA0139480	Chr01	43373559	43373794	37082305	37082541	237
TM_MH63RS3_TRA0132940	Chr01	43373559	43373794	38545514	38545750	237

>TM_G630_TRA0131980
GTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGCCT