Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: S548_Y3551_DEL1202560

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

5657408

5658154

SV Length:

Query Start:

Query End:

Allele sv Count:

747 bp

5550401

5551147

4 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
S548_FH838_DEL1202630	Chr12	5657408	5658154	5550078	5550824	747
S548_R498_DEL1202410	Chr12	5657408	5663510	5562551	5565783	3233
S548_Y3551_DEL1202560	Chr12	5657408	5658154	5550401	5551147	747
S548_MH63RS3_DEL1202550	Chr12	5657408	5658154	5553643	5554389	747

>S548_Y3551_DEL1202560
AAACGCCTTAGCCGTGGTATTATAGGGAAATACCACATCACCTTAGCAGGAATTCTCTTCTTCGTTAGCTGCCCGTCAACCTCACCTGGATCATCTCGTCTAATCTTGTATCGTAGTGCTTTACAAACAGCGCATGCTTCTAGGTTCTCGTACTCCTCACCACGATATAGGATACAATCATTCGGACATGCGTGAATCTTCTGAACTTCCAGTCCTAGAGGGCAGACTATCTTCTTAGCCTCGTACGTTGTCTCGGGCAATTTGTTTCCCTCCGGAAGAATGTTCTTGACGAGTTTCAATAAATCGCCAAATGCCTTGTCACTACCACCATTTTTTGCCTTCCATTGCAAGAACTCCAGAGTGGTATCCAACTTTTTGTGCCCCTGCTCGCAACCTGGGAAAAACGACGTTCTGTGATCCTCTAACATCTTGTCCAATTTATGGGCCCCCTTTTCACTTTCGCAGTCCTCCTTGGCATCCTGCAACATCTGACCAAGATCATCTGCAACGTCGTTATAATCAGCATCTCTATCCTCCTCGCCCGTTTGATTTCCTTCAGATCCAGCGTACTGAGCAAAGTCTAGAATATTGTCGTCTTCCACTTCATCTTTTTCCATTTCAACCCCTTGCTCTCCGTGGGATGTCCAACAATTATAGCTTGGCATGAACCCCGACTCAAACAAGTGGAAATGAATAGTCCTGGATGCAGAATACTCCTTCTGATTCTTACACTTATTGCATGGACAA