Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: R527_Tumba_DEL1224190

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

16240028

16240579

SV Length:

Query Start:

Query End:

Allele sv Count:

550 bp

9351174

9351723

19

Gene_id	Chromosome	Start	End
OsTumbaG1226926000.01	Chr12	9339950	9381838

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
R527_02428_DEL1233590	Chr12	16240028	16240579	13383443	13383999	557
R527_117425_DEL1227640	Chr12	16240028	16240579	14407938	14408493	556
R527_117534_DEL1232070	Chr12	16240028	16240579	14796724	14797279	556
R527_125619_DEL1232320	Chr12	16240028	16240579	15374459	15375016	558
R527_125827_DEL1217490	Chr12	16240028	16240580	5695314	5695870	557
R527_127518_DEL1221300	Chr12	16240028	16240573	9931069	9931612	544
R527_132424_DEL1213150	Chr12	16240028	16240580	5689823	5690378	556
R527_Basmati1_DEL1231640	Chr12	16240028	16240579	15292508	15293063	556
R527_DG_DEL1223280	Chr12	16240028	16240578	8304959	8305505	547
R527_FH838_DEL1223140	Chr12	16240028	16240573	8216557	8217098	542
R527_FS32_DEL1217670	Chr12	16240028	16240580	5720004	5720559	556
R527_G46_DEL1222840	Chr12	16240028	16240578	8163459	8164005	547
R527_G630_DEL1221090	Chr12	16240028	16240580	5730375	5730930	556
R527_LK638S_DEL1223490	Chr12	16240028	16240578	8152123	8152669	547
R527_Nipponbare_DEL1234200	Chr12	16240028	16240581	6076224	6076775	552
R527_TM_DEL1216050	Chr12	16240028	16240573	16201174	16201719	546
R527_Tumba_DEL1224190	Chr12	16240028	16240579	9351174	9351723	550
R527_Y3551_DEL1223060	Chr12	16240028	16240580	26254860	26255408	549
R527_MH63RS3_DEL1223250	Chr12	16240028	16240580	26310447	26310995	549

>R527_Tumba_DEL1224190
TGTCGCGTCCCAAAACGACTCTAAAATACATCCTCGAAATTATGCATAGAATAAGTAAAATCCATGAGAAAGCCTCCAACAATTAAAATGTGCTAAGTTAAAAGTCAAATAAGGCTTGGAGGATTTTTGTACATTTCCTAAAAGCCTAAAATGCGTAAATAAATTTTAGTGGAATTTTCAGAGCACAAATAATAATTAAGAAGAAATAAACAAAGTTAAAATGATTTTACAAAAAGAAAAACCCTAAAAAGTCTTTTTCCCCCCTTCCCCTCTTGGGCCGGCTCGGCCCACCTCCCTCCCTCTCTCTCCTCTCCCCCCCGGCCCATCCGGCCTCCTCCCCGCGCGTGCGTGCCGCTGACGGGCGGGCCCGCCCGCCACCCTCGCTGACGGGTGGGGCCCACCCGTCATCCCCTTCCTCCCGCCGCTCCCGCCGCCTCGCCCGTGCCCTAGCGCCGCCGCCGCCGCGAATCCCGCCGCTCCCGTCTGCCCCGCGTGCAATCAAGAGGGGGAATTACTCCCCGTGATTCCCTCCCTCTTTCCCCCCACTTTT