Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: R527_Tumba_DEL1221020

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

14051114

14057420

SV Length:

Query Start:

Query End:

Allele sv Count:

6306 bp

9351983

9358288

18

Gene_id	Chromosome	Start	End
OsTumbaG1226926000.01	Chr12	9339950	9381838

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
R527_02428_DEL1227990	Chr12	14051114	14057420	11096454	11102760	6307
R527_117534_DEL1226080_3	Chr12	14051114	14057411	8384890	8391199	6310
R527_127742_DEL1214680	Chr12	14051114	14057420	8959647	8965952	6306
R527_128077_DEL1225910	Chr12	14051114	14057401	7803780	7810078	6299
R527_Basmati1_DEL1225920_4	Chr12	14051114	14057411	8587321	8593629	6309
R527_D62_DEL1213030	Chr12	14051114	14057420	11102450	11108760	6311
R527_DHX2_DEL1222910	Chr12	14051114	14057401	7891485	7897777	6293
R527_FS32_DEL1213460	Chr12	14051114	14057420	16973656	16979972	6317
R527_Kosh_DEL1228540	Chr12	14051114	14058109	11022153	11029270	7118
R527_KY131_DEL1228240	Chr12	14051114	14057401	7755000	7761293	6294
R527_LK638S_DEL1218580	Chr12	14051114	14057420	16635116	16641425	6310
R527_R498_DEL1219760	Chr12	14051114	14054287	13467007	13470183	3177
R527_R9311_DEL1215470	Chr12	14051114	14057420	10179086	10185388	6303
R527_Tumba_DEL1221020	Chr12	14051114	14057420	9351983	9358288	6306
R527_XL628S_DEL1218590	Chr12	14051114	14057420	16626615	16632924	6310
R527_YX1_DEL1216040	Chr12	14051114	14057409	15852850	15859070	6221
R527_YX1_DEL1216040_1	Chr12	14051114	14057420	17253671	17259986	6316
R527_ZS97RS3_DEL1218430	Chr12	14051114	14057420	16570886	16577195	6310

>R527_Tumba_DEL1221020
CCCCGGACCTTCTCCCGTTTCGGCGTCACCTCCTTCGGCTTCGCCGTAACCTCGCCGACCTCGTCCACCCCTCCGTTTCGCCCGCCGACCGCCGGAACGCCGCCGTCCCCGTCGACCCGAGCCGCGCCGCCGCCTTCCTCCGCTCCGGTCGCCGTTCCCGTCGTCGCCGTCGACCCGGGGTGAGCCGTGGACCGCCGTTTCGCTTCCCCCTTCCCTCCCCTCTCTCGGGCGCCGCTCCGCCGCGCCGGTGGTCGCCGGCGGCGACCATCGGGGCGCGGGTACGCCGCCTCCCGTCGGCTGTGCCGGCATGGCCGCCTTCGGGCGCGCCCCGCGGCTGCCATGTGGGGCCCGGCCGTCAGCCGCCCGCGCCCTCGGGTGCGGCTGACGCGTGGGACCCACGGCGCCGGCCGGCGTAAGCCGCGTGCACCCGGTCCACCGTGGACCGTGAGGCTGCCGCGTGGGCCCCACTCCCGTGGACCCGGTCCGCGCGCTCCTCCCCTCGGCTGACGCAATAAATCTGATTTTAAATTAAAATTTAAATGAAGAAATTCGCAAATATCCATTTAAAGAGCATATAAACTTCAAATGGCCATAACTTGGCCATTTGAACTCGGAATTGGACCGTTCAAGTCTCTAATTTTTCCTTAAGAAGTCAAGAACCCATTTTTGTGCTTTGTTTCTGCTTGTTATATGGAGTTTATTAGAGTATAAGCCTTTTCTTTTCCGTTGGTCGTGTAGACGCTGCAGCTTCGGAAGATCCGCTCTTTGTGGAGGTTGAAGCCGACGTTTGGGAAAGCGAGCAAGGCAAGTCACATCATCCTTGAACATATTGAATCCCAGTTTATAAAATTATGTTGATTCAAATTATTGCATTATCGCTTTATTTAAATTCCCGCGTTATCACTGTTTTATCTAGCCATGCCTATTTACCTTTGTTATGACCTTATTATTATTGTTATTGTTATTATTACCTTGTTCACCCTAGAATAAACAAAACCCCAACTAGTGGACACTCTACTCATGGTATCACTAGTATGATTTTAGGTAGATGCTTCGCTGTTTAATTAGGTAACATTAGGTGGTTTTTCAACTCTAGACTTTGGGAATATTCATATCACCTGGACACTATGGAATGGTTTGGTTATTGTGGAATTGGCTTCACACCGCTCCTTCTATTCAAAATCCCCAAAATGGTTTTAGGCTGGGCTCGGGGTGCATGGTTTTGATAGTAGCACCTCGGCCATATAAGGACCGGTCTTCGGGCCTCTGTTGCAAAGCACTACCGTACTTCCACATGTCTAGTGGGTAAGGCTTAGTTTGTGGCTCAGTCTAGTTATAAACAAAAGTACACGGATAGAGATGGAAGAAGTCGGGGGTCGATGGACATCTCTAGGACAAATGAAGGCTACACGAGCTGCGGCCCGGTAGTCGAGATGTCATGGCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAGTCCTGCCTGCCTGTCCCGGGGGTTCCGGCCGTAGGTGGGATTGGGTCGGTACTCTTGTCTATGGCTAGGATGGGTTGGAAACTATGTCACGTCTTCCGTCTGTATACCGTGGTGGTATGTGGCACGTGGTTACACGTGAGGAAGATGTGTCCTGTGGGTAAAGATGTACACCTCTGATCAGAGTATAACCTATTCGAATAGCCGCGCCCTCGGTTATGGGCAAGCCGAGCAATGTACCCAAGTTAGTGTTTTAATTCTTAAAACCTGCTTAACAACTAAAATGTGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCTGAATCATCGTAGGCCTTGGGTTAAGGCAGGTTCGTGTGGGTTCACGGCCTTGATAAATAATATTGTATAGTTCTAGGATCGTGTTTACAAAATAGCTTTGAGCAACTAAATATCTTTAAATGCTGTTTACTGCAACCCTAACCCTGTATAGTATAACTCCTTTGTACTCCCTTGCATTTATTCTGCACTTGTGGGTGTGTCTTGTTGAGTACGGTGGTTGTACTCAGTCTTGCTCAATTTTTCCCAAACCCAGAAGAGGAGTTCCTGGAAGATGAAGGCTTTGGTGTCTAGCTCGTGCCTGCCGTCAAGCGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTCTCGTTTGTCTTTGTGTGTGCTGGGCCTTCGCTGCCCATGTAATAAATTAACTATTTACGCTTCCGTTTGTTAAACTCTGAATTGTATCAACTTTTGGAGTACCTTGCCTCCTGGGACAAGGAATAATACACGCATGTAAGGAACGCCCGTTGGGTTATTTCCGGTCGTGACAAGTTGGTATCAGAGCCCCCTTGACCCTAGGACGAGCCTTAGATCCCAAGCCTTAGCAATATTTTCGAAATAAAAATCCTTTGTATTTGTGAAAATCCTCTAGTCTCTCTCTGTCCTGCTGCTTCATTTATCGCCAAAATCTGACCTTTTAAATGTTGCTTTTCTTTTTGTTTTTGTTTGTAGATGGCCGGCAGCGTCAGCCGTCGTGGCTTGGACATGACTGGTTTCGTCTTGGAGCTGCGGGGCATGTGCGTTGTCCTGGGGTATCCGCATGGGTGGACTACCAGGGCAGGCCGCTTCCGGAGCAGGAGGGTGACGATGTAGAGCCCCACGCTGCTTGGGAGGTTACTGCAGTGATCCTCACTGGCTCTCCCGAGCGGACTTCGTTGGCAGTCACCGCGGGTGGAGATTCTTTCTCCGCCGCTTGCCAGAGCGCCGCTCTCCTCGCCATCGGCACTCTTCACCAGCGCTACTCGGACGAGTTGCAGCACTCGCCCTACCGCTACCACCCTCGCCGCGGAGGAGCCCGCGACTACGCCACCTTCCGGGATGCTAGCTCGGAGGATGACGCTACCATCATGCACCTGGCGCGCATGGTGGAGGCGTACGACGCGGCTCGTATCGACTTCCATCAGATGGTGCGCCGTGGGATGGTCGAGAACAATCTGAAGATCCTGGAGCTGCGTCAAGAGAACCTGCAGCTCAAGAAGGACCTAGACGCCGTGGAGGCGCAGCTGCATCAGCTCAAGATCGCCCAGGGAGAGGTCTGTCGCCCCAAGCGTCGCCGCGTCTGCCGCAGCCAGAAGATCACCGCCCGCAAGAGCACCTCCAGGCCCGAGCTTGTTCGTCAGTCCCTGGCGTGGACTTGCTTCGTCGAGACCCCTCGTGCCGAGCCCGCGCCCGTGGTTCCCCAGGAGGGGGAAGCCTCCGGCGTTGGTAGCACGGAGGATGCGCTGTTGCTCACCTTCCGCCCTGGCCCGTCGCAGCGGTAGACGAGCAGTTAGTAGGCTTGCGCGTGTGTTCTTTCTCGTTTGTCTTCTTGTTGGAGTTGTGTGGGGCATGGTTATGCCGGTGTGTGGCATAACTGTGTCGGAGCCTGCCTTTATTTTATTTGCCTAAGCAACTTGAACTTTAATGAACCAATTTAATAGCAGTAATAAATTCAAGAATTATGGTAGTCGTGGGAGGTTAGCTTTAATTGTCAGCTCTCTCTGTTTGCTGGTTCTGTGTGGGGTTTTCAGATGGTGATGACCAGGAGAAGTGCTAATACCGGTGATGGCAACCAACCTGAAGGCAGCAACCACAACCACCAGGGCAGCCCACCTCCACCTCCTCCTCCGCCTCCACCACCACCACCAGATACCAACGCCATTCTCACCCAAATCCTCGCCCAGCAGGCCAACATGATGACTGCTTTCCTCCACCACCTCCAAAATCCGCCACAACAGAATGCTCCACCACCACCCCCACAACACTCTAAACTCACCGAGTTCCTCCGCATCCGTCCACCCACCTTCTCTAGCTCCAACAACCCCGTGGATGCGTTGGATTGGTTGCATGCCGTGGGGAAAAAGCTAGACACTGTGCAGTGCAGCGATGAGGAGAAAGTCATCTTCGCCGCCCACCAACTGCAGGGGCCCGCATCTCTATGGTGGGACCATTTCCAGGCTACGCAGCCAGAGGGGCAGCCTATTACTTGGGCTCGCTTCACCGCCGCTTTCCGGAGAACCCATGTGCCCGCCGGAGTCATGGCCCTTAAGAAAAGGGAATTCCGAGAGTTGAAGCAAGGCCACCGCTCCGTGATGGAGTATTTGCATGAGTTCAACAACCTGGCCCGTTACGCCCCGGAGGATGTGCGGGAAGATGAGGAGAAGCAAGAGAAGTTCTTGGCAGGAATGGACCCTGAGCTGTCCGTCCGTCTAGTCTCCGGGGACTATCCAGATTTCCAACGTCTGGTGGACAAGAGCATCCGCTTGGAAGCCAAGCACAAGGAACTGGAGTCGCACAAGCGCCGCTTGGCGAATTTCCGCAATCAACAGGGTGCTAACCAAAGGGTCCGCTACACCAATCCCTATCCAGGGGGATCGTCCTCGCAGCAGCAACAGCAGCAACAACCTCGCTCCGCGCCCTGACCTCAATTCGTGGTGCGCGTCCCACAGCCGCAGCAACAGCAGAGTCAGCAAGGGACTCGTGCGCCCCGTCCTCCTATGCCAGCCGTGCAGCCTGGTCAAGGCCGCAGGGACGCTCAAGGTCCGTAGCGTCTGTGCTTCAACTGCTTCGAGCCCGGGCACTTTGCGGATAAATGCCCGAAGCCGAGGCGCCAGCAAGGCCAAGCGCCTCCCCGCTCCAACAACGGTGGGAAGGATGTTATTCGGGGTCGTGTGAACCACGTGACGGCCGAGGACGTGCTGACAACTCCAGACGTCATCGTTGGTACGTTCCTCATTCATTCCATCCCTGCTACCATTTTGTTCGACTCTGGAGCATCCCACTCGTTTATATCTGTGCCATTCGTGGGGAGAAATCAGTTGGGGGTAGAAAGGCTTAGGAACCCTCTGCTCATCACCACCCCTGGAGGGGTTATGACAGCAAAGTATTATAGTCCTGCCGTCCCTATAGAAATTCAGGGGATTCCTTTTCCCTCAGATCTGATTCTTCTAGACACCAAGAACTTGGATGTGATCCTTGGGATGAATTGGTTGGCTCAATTCCAAGGAGTAGTGGATTGCGCGAGACGCACTGTTACTCTGTACCGAGGGCCGGAACAACCGGTTGTTTTCTTTGCACCCCCAACCTCTGTCAGAAGTTCAGAACTTCATCAGATAGTACTGTCAGAAATCCCCATCGTCAGGGAGTTCGGAGATGTGTTTCCGGAAGAACTACCCGGTATGCCGCCCAAGCGAGAGATTGAGTTCCGGATAGATCTTGCTCCAGGAACCACTCCTCTGTACAAGCGACCCTACCGTATGGCAGCAAATGAACTGGCCGAAGTTAAGAAACAGTTGGAAGAGTTGAAAGAAAAGGGGTACATACGTCCGAGTACTTCCCCCTGGGGTGCTCCTGTGATTTTTGTGGAGAAGAAAGACAAGACGAAGAGGATGTGCGTTGACTACAGAGCTCTCAATAAAGTCACCATCAAAAACAAGTACCCTCTTCCCCGGATCGATGATCTGTTCGATCAGCTTAAAGGTGCCACGGTATTCTCCAAGATCGATCTTCGTTCCGGATATCACCAGTTGCGCATTAGGGAAGAAGATATTCCGAAGACCGCATTCACCACGCGATACGGACTGTATGAATTCACGGTGATGTCATTCGGTCTAACCAATGCTCCTGCCTTCTTCATGAACTTAATGAACAAAGTGTTCATGAAATACTTGGATAAGTTTGTTGTGGTTTTCATTGATGACATTCTGATATACTCACAATCAGAGGAAGACCATCAGCACCATCTCCGTCTGGTGTTGGGAAAGTTGCGGGAACATCAATTGTATGCCAAACTTAGCAAGTGTGAGTTCTGGTTATCCGAAGTCAAATTCTTAGGGCACGTGATATCTGCTAAAGGAGTTGCTGTGGACCCCGAAACAGTGACCGCCGTCACTGATTGGAAGCAACCCAAGACAGTCACTCAAGTCCGCAGTTTCTTAGGTTTGGCAGGATACTACCGGAGGTTCATCGAGAACTTCTCCAAAATCGCTCGACCCATGACACAGTTGTTGAAGAAAGAAGAGAAATTTGTGTGGAGCCCGCAATGCGAGAAGGCGTTTCAAACTCTCAAAGAAAAGCTGGTTTTCTCGCCAGTGTTAGTCTTGCCAGATACTCGCAAGGATTTCATGGTGTATTGTGACGCTTCGCGCCAAGGATTGGGGTGCGTGCTCATGCAGGACGGTCATGTGGTGGCCTATGCCTCACGCCAGCTACGGCCTCATGAAGGCAACTACCCTACCCATGATTTGGAGTTAGCCGC