Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: R527_Tumba_DEL1220980

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

14036646

14039131

SV Length:

Query Start:

Query End:

Allele sv Count:

2487 bp

9358283

9360769

16

Gene_id	Chromosome	Start	End
OsTumbaG1226926000.01	Chr12	9339950	9381838

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
R527_02428_DEL1227950	Chr12	14036646	14039131	13374384	13376881	2498
R527_117534_DEL1226020	Chr12	14036646	14037322	8334624	8335305	682
R527_117534_DEL1226020_3	Chr12	14036646	14039131	7874593	7877087	2495
R527_127518_DEL1216630	Chr12	14036646	14039131	9259611	9262104	2494
R527_127742_DEL1214640	Chr12	14036646	14039131	8965947	8968433	2487
R527_132278_DEL1227220_2	Chr12	14036646	14039131	17072938	17075433	2496
R527_DHX2_DEL1222880	Chr12	14036646	14039131	11001682	11004170	2489
R527_HZ_DEL1205430	Chr12	14036646	14039131	10840266	10842759	2494
R527_II32_DEL1215060	Chr12	14036646	14039131	8951823	8954290	2468
R527_Kosh_DEL1228510	Chr12	14036646	14039131	12488942	12491433	2492
R527_NamRoo_DEL1226120	Chr12	14036646	14039131	9216932	9219425	2494
R527_Nipponbare_DEL1228500	Chr12	14036646	14039131	12995552	12998052	2501
R527_R9311_DEL1215430	Chr12	14036646	14039131	9054724	9057209	2486
R527_Tumba_DEL1220980	Chr12	14036646	14039131	9358283	9360769	2487
R527_WSSM_DEL1211200	Chr12	14036646	14039131	10772545	10775035	2491
R527_ZH11_DEL1228980	Chr12	14036646	14039131	12390742	12393240	2499

>R527_Tumba_DEL1220980
AGCCGCGGTGGTTCATGCTCTAAAAATCTGGCGGCACTATCTCATTGGGAATCGCTGTGAAATATATACTGATCATAAGAGTTTGAAATACATCTTCACTCAGTCGGATCTGAATCTTCGGCAAAGGAGATGGTTAGAACTCATCAAGGATTATGATGTGGGAATTCACTATCATCCCGGTAAGGCCAACGTGGTTGCCGACGCTCTAAGTCGGAAAAGCCACTGCAACATTCTTAACGTCCGTGGCATTCCACCCGAACTTAATCAACAGATGGAAGCCCTGAACCTAAGCATAGTTGGTCGCGGATTCTTGGCTGCGTTGTAAGCCAAGCCTACCTTGCTTGATCAAATCTGCGAGGCTCAGAAGAACGACCCGGACATGCATGGACTCCTCAAGAATATGAAACAGGGTAAAGCCGCTGGTTTCACAGAGGATGAACACGGAACCCTATGGAACGGAAATCGGGTATGCGTTCCAGATAACAGAGAACTTAAACAGCTGATACTTCAGGAAGCTCACGAAAGTCCTTATTCCATCCACCCTGGCAGTACGAAGATGTACTTAGACTTGAAGGAGAAATACTGGTGGGTTAGTATGAAGCGGGAAATTGCAGAGTTCGTGGCCCTTTGTGATGTGTGCCAGCGTGTCAAGGCAGAGCACCAACGACCGGCCGGACTTCTCCAACCTCTCCAAGTACTAGAATGGAAATGGGATGAAATTGGGATGGATTTCATCACCGGACTTCCAAAAACCCAAGGTGGATATGATTCTATATGGGTAGTTGTGGATCGATTAACCAAGGTAGCTCGATTTATTCCTGTGAAGACCACCTATGGAGGGAACAAACTAGCCGAACTCTACTTCGCTAGGATCGTGAGCCTCCATGGCGTTCCCAAGAAAATCGTATCTGATAGGGGAAGCCAATTCACCTCTCACTTTTGGAAGAAGCTCCAAGAAGAGCTAGGTACCCGATTAAATTTCAGCACCGCGTATCACCCGCAGACAGATGGACAGACCGAGCGTCTAAATCAGATCCTAGAAGATATGCTTCGCGCATGTGCCCTAGATTTCGGGAAGACCTGGGATAAGAGTCTCCCCTATGCCGAGTTCTCCTACAATAACAGCTACCAAGCCAGTATACAAATGGCACCTTATGAAGTGTTGTATGGGCGCAAGTGCCGGACACCGCTTTTGTGGGACCAAGTTGGGGAAAGCCAAGTGTTCGGGACTGATATCCTGAGAGAAGCTGAAGCGAAGGTCAGAACCATTCGGGATAATCTAAAGGTGGCACAGTCCCGGCAGAAAAGTTATGCAGATAACCGTCGCCGTAACCTGGAATTCGCGGTGGACGATTTTGTGTACCTTCGGGTCACGCCATTGCGGGGTGTACACAGGTTTCGGACAAAAGGGAAGCTCGCACCTCGGTTCGTGGGTCCTTTCCGTATCATTGCTCGGCGCGGAGAAGTCGCTTACCAGTTGGAACTGCCTGCCTCCTTGGGCAATGTGCATGATGTGTTCCATGTGTCGCAACTCAAGAAATGTCTCCGAGTGCCATCCGAGCAGGCCGACTCAGAGCAAATTGAAGTTCGCGAAGACTTGACCTACGTGGAGAGGCCAGTGAAAATCCTGGACACCATGGAGCGCAGGACCAGGAACCGGGTAATCCGTTTTTGCAAGGTCCAGTGGAGCAACCACGCCGAAGAAGAAGCTACCTGGGAGCGTGAAGACGAGCTGAAGGCAGCCCATCCCGATCTCTTCGCCAGTTCTTCCGAATCTCGGGGTCGAGATTCCGTTTAAGGGGGGGTAGGTTTGTCGCGTCCCAAAACGACTCTAAAATACATCCTCGAAATTATACATAGAATAAGTAAAATCCATGAGAAAGCCTCCAACAATTACAATGTGCTAAGTTAAAAGTCAAATAAGGCTTGGAGGATTTTTGTACATTTCCTAAAAGCCTAAAATGCGTAAATAAATTTTAGTGGAATTTTCAGAGCACAAATAATAATTAAGAAGAAATAAACAAAGTTAAAATGATTTTACAAAAAGAAAAACCCTAAAAAGTCTTTTTCCCCCCTTCCCATCTTGGGCCGGCTCGGCCCACCTCCCTCCCTCTCTCTCCTCTCCCCCCCGGCCCATCCGGCCTCCTCCCCGCGCGCGCGTGCCGCTGACGGGCGGGCCCGCCCGCCACCCTCGCTGACGGGTGGGGCCCACCCGTCATCCCCTTCCTCCCGCCGCCTCGCCCGTGCCCTAGCGCCGCCGCCGCCGCGAATCCCGCCGCTCCCGTCTGCCCCGCGTGCAATCAAGAGGGGGAATTACTCCCCGTGATTCCCTCCCTCTTTCCCCCCACTTTTCCCTCTCTCTCTCCCTCGGATTCGTTCGAAAACGTTTCCCCCTAAACCTCGCCGGCGCATCAATGGCGGCCGGATCTTCCGCGGCCGATTCCCCCTCATCCGGCCGCTCTCTCCCCCTCCCAACCCTATATAAAC