Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: OglaRS2_II32_INS0106090

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os O.glaberrima: OglaRS2 | OglaRS2

Os XI-1A: II32 | II32

Chr01

3484542

SV Length:

Query Start:

Query End:

Allele sv Count:

535 bp

3865892

3866426

29

Gene_id	Chromosome	Start	End
OsII32G0100431100.01	Chr01	3863287	3866488

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
OglaRS2_125619_INS0106240	Chr01	3484542	3484542	3948220	3948754	535
OglaRS2_127518_INS0106390	Chr01	3484542	3484542	3962533	3963067	535
OglaRS2_127564_INS0106070	Chr01	3484542	3484542	3877806	3878340	535
OglaRS2_127742_INS0106610	Chr01	3484542	3484542	3964052	3964586	535
OglaRS2_132424_INS0106190	Chr01	3484542	3484542	3897289	3897823	535
OglaRS2_Basmati1_INS0106620	Chr01	3484542	3484542	3913736	3914270	535
OglaRS2_D62_INS0105980	Chr01	3484542	3484542	3736873	3737407	535
OglaRS2_DG_INS0106020	Chr01	3484542	3484542	3730108	3730642	535
OglaRS2_FH838_INS0106710	Chr01	3484542	3484542	4231288	4231822	535
OglaRS2_FS32_INS0106070	Chr01	3484542	3484542	3879806	3880340	535
OglaRS2_G630_INS0106680	Chr01	3484542	3484542	3942339	3942873	535
OglaRS2_G8_INS0106460	Chr01	3484542	3484542	3966034	3966568	535
OglaRS2_HZ_INS0106430	Chr01	3484542	3484542	3973037	3973571	535
OglaRS2_II32_INS0106090	Chr01	3484542	3484542	3865892	3866426	535
OglaRS2_IR64_INS0106470	Chr01	3484542	3484542	3845676	3846210	535
OglaRS2_J4155_INS0106490	Chr01	3484542	3484542	3958666	3959200	535
OglaRS2_J4155S_INS0106510	Chr01	3484542	3484542	3971710	3972244	535
OglaRS2_LK638S_INS0106640	Chr01	3484542	3484542	4078992	4079526	535
OglaRS2_R527_INS0106570	Chr01	3484542	3484542	3957957	3958491	535
OglaRS2_R9311_INS0106520	Chr01	3484542	3484542	3958207	3958741	535
OglaRS2_S548_INS0106440	Chr01	3484542	3484542	3965902	3966436	535
OglaRS2_Tumba_INS0106400	Chr01	3484542	3484542	3872026	3872560	535
OglaRS2_WSSM_INS0106350	Chr01	3484542	3484542	3962184	3962718	535
OglaRS2_XL628S_INS0106430	Chr01	3484542	3484542	3861680	3862214	535
OglaRS2_Y3551_INS0106590	Chr01	3484542	3484542	3942328	3942862	535
OglaRS2_Y58S_INS0106540	Chr01	3484542	3484542	3959032	3959566	535
OglaRS2_YX1_INS0106080	Chr01	3484542	3484542	3866459	3866993	535
OglaRS2_ZS97RS3_INS0106070	Chr01	3484542	3484542	3876430	3876964	535
OglaRS2_MH63RS3_INS0106700	Chr01	3484542	3484542	3948257	3948791	535

>OglaRS2_II32_INS0106090
GGCCTGTTTGGTTGGCAACCTGAGTGATGTGCCTAAGAAAACTACATGCCTAAGAGGCATTAGCTATCCTGTCAAAACTTGCCTGATGAGGCTAGCCTGAGCAAATGTTGTTTGGTTAGTAGCCTAAGCCTGAGGAAACTAAATTGAGATTAGATGGTTCATAATTACATGGTTAAGGTAGATATTATTTAAATAAAACGGTATCTTATATCCTAATCTATCGCATATAAGCAAATGTTGTATTTTCGGTTCGTTTGCACCAACCAAGATTCAACAATAAAATATTCCAACACCTTTTGCATGCACAGTCGTGGGCCCGTGACAGGACAAGCTTGATTAGCGCGTTTTGTTTTGTGTAACTAGACTGAGCCAGGCGCTCGTTTTTGGTGGCCTGAGCTAGGCTAATGAACCTATCAGGTTTTTCAGGTCAGGCAGAGAATGAAACCATCAGGCTACCAACCAAACGACACAGGATATCCCTCAGGGACATATCAGGCCAGGCTCTTTTGGCTCAGGGCTTCAACCAAACAGCCCC