Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Nipponbare_XL628S_DEL1208600

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-temp: Nipponbare | IRGSP 1.0

Os XI-adm: Xiangling628S | XL628S

Chr12

5927987

5928691

SV Length:

Query Start:

Query End:

Allele sv Count:

695 bp

5590145

5590839

7 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Nipponbare_FH838_DEL1208330	Chr12	5927987	5936671	5545229	5551501	6273
Nipponbare_LK638S_DEL1208630	Chr12	5927987	5928691	5598089	5598783	695
Nipponbare_R498_DEL1208380	Chr12	5927987	5928691	5560188	5560882	695
Nipponbare_XL628S_DEL1208600	Chr12	5927987	5928691	5590145	5590839	695
Nipponbare_Y3551_DEL1208270	Chr12	5927987	5936671	5545552	5551824	6273
Nipponbare_ZS97RS3_DEL1208340	Chr12	5927987	5928691	5567461	5568155	695
Nipponbare_MH63RS3_DEL1208290	Chr12	5927987	5936671	5548794	5555066	6273

>Nipponbare_XL628S_DEL1208600
AAGTTTCGTATATTAAACCTCTAATAATCTTATATTAAATCTCTAACAATCTTTAACACTCAAATATGCTAAGTCTAATAATCTAATAATCTCTAACACTCACATATGCTAACTCTAATAATCTAATAATCTTATATTAGAAATCTAACAATCTTATATTATATCCCTAACAATCACATCTTTACATCACTTGCCTGCGCGAATTCCTTCGAGGGCTAGCTACCACTTCGGCTTGGGGGACGACGACGACGACGTCTTCTCTGCAACATGCAAAAAAAATGTATTAGTCTAAATGCAAAGGAACATATAATGTATTTCACGTTTCCAAGTATATATAATCATATATATATGCTAAGTTCAACAATAGTTTAATTATATCGTTCATACACATTTCGCTCGCGTTCGTTCTCACACTTTTAGTTCAAGTGCATTCACGTTCGTTAACGTTTCAATCACGTTCGTTCGCGTTTCATTCACGTTCGTTTGAGTTCGTTCACTAACACTCACGTTCGTTCACGTTTCAGTCACGTTCGTTCGCGTTCGTTCATGTTTGTTCACGTTTCGTTCGCGTTCGGTCGCGTTTCTTTAACGTTTCGTTCGCGTTCGTTCACGTTCGTTCGCGTTCGTTAAGCGTTCGTTCGCGTTCGTTCACCTTAGTTCGCGTTCGTTCGCTAACACTCACGTTCGTTCACGTT