Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Nipponbare_IR64_DEL0439230

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-temp: Nipponbare | IRGSP 1.0

Os XI-1B1: IR 64 | OsIR64RS1

Chr04

14576424

14578958

SV Length:

Query Start:

Query End:

Allele sv Count:

3109 bp

27264208

27267316

20

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Nipponbare_125619_DEL0441550	Chr04	14576424	14577338	28679227	28680141	915
Nipponbare_125827_DEL0441270	Chr04	14576424	14578958	29653818	29656926	3109
Nipponbare_127652_DEL0441190	Chr04	14576424	14578958	27502175	27505270	3096
Nipponbare_127742_DEL0439930	Chr04	14576424	14578958	28906685	28909793	3109
Nipponbare_D62_DEL0439850	Chr04	14576424	14578958	28336512	28339618	3107
Nipponbare_G8_DEL0440710	Chr04	14576424	14578958	28615902	28619007	3106
Nipponbare_HZ_DEL0439360	Chr04	14576424	14578958	29078352	29081460	3109
Nipponbare_II32_DEL0440560	Chr04	14576424	14578958	28835283	28838387	3105
Nipponbare_IR64_DEL0439230	Chr04	14576424	14578958	27264208	27267316	3109
Nipponbare_LK638S_DEL0440480	Chr04	14576424	14578958	28833545	28836653	3109
Nipponbare_R498_DEL0437590	Chr04	14576424	14578958	27798869	27801977	3109
Nipponbare_R527_DEL0437930	Chr04	14576424	14578958	28379530	28382638	3109
Nipponbare_R9311_DEL0440130	Chr04	14576424	14578958	28987438	28990546	3109
Nipponbare_S548_DEL0437700	Chr04	14576424	14578958	27860587	27863695	3109
Nipponbare_TM_DEL0440030	Chr04	14576424	14578958	27025224	27028332	3109
Nipponbare_WSSM_DEL0439740	Chr04	14576424	14578958	28467608	28470715	3108
Nipponbare_XL628S_DEL0440600	Chr04	14576424	14578958	28960673	28963781	3109
Nipponbare_YX1_DEL0439320	Chr04	14576424	14578958	27362265	27365373	3109
Nipponbare_ZS97RS3_DEL0440910	Chr04	14576424	14578958	29174618	29177726	3109
Nipponbare_MH63RS3_DEL0438990	Chr04	14576424	14578958	29399678	29402786	3109

>Nipponbare_IR64_DEL0439230
TAGGGCTGTCAAAAAAGCTCGGAGCTCGCGAGCAGCTCGAGCTCGGCTCAAGTTCGACTCGGCAAGGATTCGAGCCGAGCTCGAGCTTGTCTCGAAGCTCGCGAGTTCTACCGAGACGAGCTCGAGCTATTCGGCAGAAGCTTGAAATTTTCACTCCCGCTACCCATCCCAATTTCTCCCGCACTCCAATTCCAAAATCCTACCACCAACAGCAGTCCATCACCTAACCATTTATTTCCCTTATATCCCCATCCCGTATCCAAACCCTAGCTCATTTGCTCTCTTCCTCGAAACATTTCTCTTCTAGATCTACAATCCTAGGCTGCTCTAGTGCTCCACTGACCACTGCTGTGGATCTAGCCAAGCACCGTCTATCCTTCGCCTCTCCTGTCCAGGAAGAACCCCATGGAGGACAGCAGCAGCCCACCGCCTCCGCCGTGAGTGACGAACCGACGACTCGGATCTGAGTAAGTTTCCTCTTCTTTCTTTGTTTCACATTTTTATTTCTTTTGCACCCACATGTATCTAGGGCCCTACATGTATTAACTGTGTAGTGTTTAGTTGCTTGATGGATGTTATTGATTTACATTGAATTTTATGGACTAGGTGGAGACATGGAGTAGTACTTATCTTGCTGTTCTCCTCTTCTGAAGAAAGACTGAAGGTTGCAGAACACCGTGTGTTTGCCATTTGCCAAGGTAAATTGATGGCAATGCTTTTCTTGTTGTACTTGTTTGATTCCTTCCCTTGTGCAGAATATATATTGATAGCAGTTGGTATTTTTATTTTTTGTAGATGTCTGTAAACCTGCAAAGACAGCTATCTGTAGAGATCGAGTCACCGAGCAATAGAGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCTATGAGTTGCCATTTTGCCTTGTGGAGTATACATGGTTTAATGTTTTGCTAAAGAGGCTAAACCCTTCTTACAAAAAGGTCTCTAGAAATACCATTAGAAGTGATTGTATGAGGCTTTATGAATCTGAAAAAGAAAAACTGAAGAGGACTTTCAAAGATGTTAGAAAGATAAGCCTCACATGTGATCTTTGGACCTCTAACCAAACAATTTGCTACATGAGCCTTGTTGCCCACTACATAGATGCTGATTGGTCAATGCATTGTCGTGTTATTAACTTTCTTGAGTTGGAGCCTCCACATACTGGTGTAGTTATTGCTAATGCCATTTCTGATTGTCTTGCTTCATGGAGAATTGAGGACAAGATAGCTAGCATCACATTTGACAATGCCTCAAGTAATGACAGTGCTGCTAACCTGTTGCTTGCCAAGTTTACAAAACGTGGTTCACTTTGGTTTTATGGAAAATTCCTTCATATCCGCTGTTGTGCTCACATTCTGAACTTAATTGTCCAAGATGGTCTGGCTGTGATTAAGCATATAATTGACAAAGTTAGGGACACTATCAAGTACATCAAGAAATCAAACAATCGAGCATACAAGTTCAGTGCTGATATTGATTCTCTCAACCTTAAAAGTGACATGGGTTTGGCTATTGATTCCTGCACAAGGTGGGGCTCAACCTTCAAAATGCTGCAATCTGCATTTTTTTATAGGTCTGCCTTGGATGTATATGCTGCAGGAGATGCAAACTATAGGTGGCTGCCAACACCAGAGGAATGGAATCTATATTGTGAAGTCAATGATGCCCTTTCTGTCATTCATGCAGCCACTGAGGAGTTCTCAGGTTCAACCTACCCAACATCTAACCTTTTTTATTCTCACATTGTCGATATTAAGAGAGTACTAGGTCAGTTGTTGAAGTCCAAAGACCCAATTCTTAAAGAAATGGCAAATGCAATGCTTGAAAATTTTGAGAAGTACTGGGGCCCAGAATGCAATACTTTGTTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACTGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCACATCAAAGGAAAATGATGCCACCACTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTCTGCTGCTAGCCAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTTGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTTGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCAAGTGATTAGTGATTATCGCAGCTCTTTACTCCCATCAACAGTACAAGCTTTGGTGTGTACATCTAGTTGGATTAGAGGAGGCCACCACAAAAGCACATATTTAGTAAGTTCTTATATTTTCATGTTTCTAACCAATTAATAGAGATACACAATCTAATAATCTATGTTTACTTGTTTGTTGCATACTAGGAGGATGATACTAATTCTATTATCCTTGTCCCAACTCAAGCTTCAACTGCAAATTCGGTTGTGGGCAGCAATTAGACTCGTTTGTCAGGTATATGTTTGAGGTTATATAAATTATCTATTGCTACCATATCAATTCCTCATCATTGATGAAACATTACCTATAATCT