Variation ID: Nipponbare_IR64_DEL0439180

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os GJ-temp: Nipponbare | IRGSP 1.0
Os XI-1B1: IR 64 | OsIR64RS1
Chr04
14571864
14572519
SV Length:
Query Start:
Query End:
Allele sv Count:
677 bp
27267310
27267986
21
Gene_id Chromosome Start End
OsIR64_04g0021500 Chr04 27264102 27273790
SV_id Chromosome ref_start ref_end query_start query_end length
Nipponbare_117534_DEL0439630 Chr04 14571864 14572519 26889743 26890419 677
Nipponbare_125619_DEL0441510 Chr04 14571864 14572519 28680135 28680801 667
Nipponbare_125827_DEL0441240 Chr04 14571864 14572519 29656920 29657596 677
Nipponbare_127652_DEL0441140 Chr04 14571864 14572519 27505264 27505940 677
Nipponbare_127742_DEL0439880 Chr04 14571864 14572519 28909787 28910463 677
Nipponbare_D62_DEL0439800 Chr04 14571864 14572519 28339612 28340288 677
Nipponbare_G8_DEL0440660 Chr04 14571864 14572519 28619001 28619677 677
Nipponbare_HZ_DEL0439310 Chr04 14571864 14572519 29081454 29082130 677
Nipponbare_II32_DEL0440530 Chr04 14571864 14572519 28838381 28839057 677
Nipponbare_IR64_DEL0439180 Chr04 14571864 14572519 27267310 27267986 677
Nipponbare_LK638S_DEL0440440 Chr04 14571864 14572519 28836647 28837323 677
Nipponbare_R498_DEL0437550 Chr04 14571864 14572519 27801971 27802647 677
Nipponbare_R527_DEL0437890 Chr04 14571864 14572519 28382632 28383308 677
Nipponbare_R9311_DEL0440090 Chr04 14571864 14572519 28990540 28991216 677
Nipponbare_S548_DEL0437650 Chr04 14571864 14572519 27863689 27864365 677
Nipponbare_TM_DEL0440000 Chr04 14571864 14572519 27028326 27029002 677
Nipponbare_WSSM_DEL0439690 Chr04 14571864 14572519 28470709 28471385 677
Nipponbare_XL628S_DEL0440570 Chr04 14571864 14572519 28963775 28964451 677
Nipponbare_YX1_DEL0439270 Chr04 14571864 14572519 27365367 27366043 677
Nipponbare_ZS97RS3_DEL0440880 Chr04 14571864 14572519 29177720 29178396 677
Nipponbare_MH63RS3_DEL0438950 Chr04 14571864 14572519 29402780 29403456 677

>Nipponbare_IR64_DEL0439180
ATAATCTTTGCACATGGTTTCAGATATAACTTTACGAAACATTAATGCATGCATATAGCATAGCATCAACAATTAGTTTGAAGAAAGTGCTTGGAGGTTTCACATTGGCGTACTGCCATTGCCAATAGTGGAGTAAATATTTTGTGACAGTTGAAATTTGAAGTACGCTGTGTTAGTAGTATAAGTAATATTTAGATATTAGAGCTTTTAGATGGAACATATGTTGGGAACTTCCGGTGGGCTACTTTTGATGTTAATTGATGCTCTATGTTCTTTCAAGTCATTGACACATGATATTGTAATGTTTCTTATGGTGTTATACACACCGGTCTATTATAAAGTAGTAATCCTATTATGACTTATGCACTACTATGAATTTGTAATCTTTCTAGTATATACCTGTCGAGAAGCTATTATATTCTATTATGAATTTGTAATCCTACTTTGGCTTGTTAAGAAGCTTTTATTGGGAGATAAGTTCAGATTGCTGAAGGAAACAGTCTTAACGAGCTTCTACGAATCGAGCTCGAGTCGAGCCGAGCCTTGATCGAGCTCGAACCGAGCCTACCTTCAAGCTCGAAGGTAATGCTGGGCTCGGCTCGAGCTCGGCTCGAGCCTGTACTGAGCTCGAGCTTAGGTAGGTAAGCTCGCTCGAGCTCAGCTCGTTGACAGCCCTA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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