Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: NamRoo_Tumba_DEL1213020

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

7702150

7703778

SV Length:

Query Start:

Query End:

Allele sv Count:

1626 bp

9351174

9352799

26

Gene_id	Chromosome	Start	End
OsTumbaG1226926000.01	Chr12	9339950	9381838

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
NamRoo_117425_DEL1209960	Chr12	7702150	7703468	9184164	9185480	1317
NamRoo_125827_DEL1212430	Chr12	7702150	7703778	5685977	5687604	1628
NamRoo_127518_DEL1211870	Chr12	7702150	7703778	7786294	7787928	1635
NamRoo_127652_DEL1211050	Chr12	7702150	7703778	8247452	8249072	1621
NamRoo_127742_DEL1212590	Chr12	7702150	7703778	5717571	5719197	1627
NamRoo_132424_DEL1211880	Chr12	7702150	7703778	5680488	5682114	1627
NamRoo_Basmati1_DEL1209700	Chr12	7702150	7703778	7930003	7931630	1628
NamRoo_D62_DEL1211940	Chr12	7702150	7703778	5785511	5787136	1626
NamRoo_FH838_DEL1211770	Chr12	7702150	7703778	8216557	8218177	1621
NamRoo_FS32_DEL1212160	Chr12	7702150	7703778	5710669	5712295	1627
NamRoo_G630_DEL1212010	Chr12	7702150	7703778	5721041	5722667	1627
NamRoo_HZ_DEL1212110	Chr12	7702150	7703778	5703310	5704936	1627
NamRoo_II32_DEL1212500	Chr12	7702150	7703778	5706586	5708207	1622
NamRoo_IR64_DEL1212380	Chr12	7702150	7703778	5678768	5680394	1627
NamRoo_J4155_DEL1212260	Chr12	7702150	7703778	5849772	5851398	1627
NamRoo_J4155S_DEL1212350	Chr12	7702150	7703778	5850656	5852282	1627
NamRoo_LK638S_DEL1212240	Chr12	7702150	7703778	21922713	21924340	1628
NamRoo_R527_DEL1212110	Chr12	7702150	7703778	5651786	5653412	1627
NamRoo_S548_DEL1212080	Chr12	7702150	7703778	5651167	5652792	1626
NamRoo_TM_DEL1211450	Chr12	7702150	7703778	5680246	5681872	1627
NamRoo_Tumba_DEL1213020	Chr12	7702150	7703778	9351174	9352799	1626
NamRoo_Y3551_DEL1211680	Chr12	7702150	7703778	8104586	8106206	1621
NamRoo_Y58S_DEL1212220	Chr12	7702150	7703778	5845242	5846868	1627
NamRoo_YX1_DEL1212750	Chr12	7702150	7703778	6341605	6343231	1627
NamRoo_OglaRS2_DEL1216210	Chr12	7702150	7703778	14388218	14389836	1619
NamRoo_MH63RS3_DEL1211880	Chr12	7702150	7703778	8108315	8109935	1621

>NamRoo_Tumba_DEL1213020
TGTCGCGTCCCAAAACGACTCTAAAATACATCCTCGAAATTATGCATAGAATAAGTAAAATCCATGAGAAAGCCTCCAACAATTAAAATGTGCTAAGTTAAAAGTCAAATAAGGCTTGGAGGATTTTTGTACATTTCCTAAAAGCCTAAAATGCGTAAATAAATTTTAGTGGAATTTTCAGAGCACAAATAATAATTAAGAAGAAATAAACAAAGTTAAAATGATTTTACAAAAAGAAAAACCCTAAAAAGTCTTTTTCCCCCCTTCCCCTCTTGGGCCGGCTCGGCCCACCTCCCTCCCTCTCTCTCCTCTCCCCCCCGGCCCATCCGGCCTCCTCCCCGCGCGTGCGTGCCGCTGACGGGCGGGCCCGCCCGCCACCCTCGCTGACGGGTGGGGCCCACCCGTCATCCCCTTCCTCCCGCCGCTCCCGCCGCCTCGCCCGTGCCCTAGCGCCGCCGCCGCCGCGAATCCCGCCGCTCCCGTCTGCCCCGCGTGCAATCAAGAGGGGGAATTACTCCCCGTGATTCCCTCCCTCTTTCCCCCCACTTTTCCCTCTCTCTCTCCCTCGGATTCGTTCGAAAACGTTTCCCCCTAAACCTCGCCGGCGCATCAATGGCGGCCGGATCTTCCGCGGCCGATTCCCCCTCATCCGGCCGCTCTCTCCCCCTCCCAACCCTATATAAACACTCCCCGTGCCTCCCTCCGCCGTTTCCGCCACTCGCCGCTCTCTCACTCCGCCGGAATCGAGCTCGCGCCGTCGCTCTCTCTCTCCGCCGTCGCCGCCGAGCTCCGGTCCGCCGCCGTCGTCGCCCCGGACCTTCTCCCGTTTCGGCGTCACCTCCTTCGGCTTCGCCGTAACCTCGCCGACCTCGTCCACCCCTCCGTTTCGCCCGCCGACCGCCGGAACGCCGCCGTCCCCGTCGACCCGAGCCGCGCCGCCGCCTTCCTCCGCTCCGGTCGCCGTTCCCGTCGTCGCCGTCGACCCGGGGTGAGCCGTGGACCGCCGTTTCGCTTCCCCCTTCCCTCCCCTCTCTCGGGCGCCGCTCCGCCGCGCCGGTGGTCGCCGGCGGCGACCATCGGGGCGCGGGTACGCCGCCTCCCGTCGGCTGTGCCGGCATGGCCGCCTTCGGGCGCGCCCCGCGGCTGCCATGTGGGGCCCGGCCGTCAGCCGCCCGCGCCCTCGGGTGCGGCTGACGCGTGGGACCCACGGCGCCGGCCGGCGTAAGCCGCGTGCACCCGGTCCACCGTGGACCGTGAGGCTGCCGCGTGGGCCCCACTCCCGTGGACCCGGTCCGCGCGCTCCTCCCCTCGGCTGACGCAATAAATCTGATTTTAAATTAAAATTTAAATGAAGAAATTCGCAAATATCCATTTAAAGAGCATATAAACTTCAAATGGCCATAACTTGGCCATTTGAACTCGGAATTGGACCGTTCAAGTCTCTAATTTTTCCTTAAGAAGTCAAGAACCCATTTTTGTGCTTTGTTTCTGCTTGTTATATGGAGTTTATTAGAGTATAAGCCTTTTCTTTTCCGTTGGTCGTGTAGACGCTGCAGCTTCGGAAGATCCGCTCTTTGTGGAGGTTGAAGCCGACGTTTGGGAAAGCGAGCAAGGCAAGTCACATCA