Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: NamRoo_127564_INS0450100

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Chr04

23065366

23069299

SV Length:

Query Start:

Query End:

Allele sv Count:

3880 bp

29157054

29160933

28

Gene_id	Chromosome	Start	End
OsLima_04g0022000	Chr04	29152874	29161903

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
NamRoo_125827_INS0451120	Chr04	23065366	23069299	29657890	29661768	3879
NamRoo_127518_INS0453120	Chr04	23065366	23069299	28880930	28884809	3880
NamRoo_127564_INS0450100	Chr04	23065366	23069299	29157054	29160933	3880
NamRoo_127742_INS0449820	Chr04	23065366	23069299	28910757	28914655	3899
NamRoo_132424_INS0455210	Chr04	23065366	23069299	29792907	29796805	3899
NamRoo_CN1_INS0449720	Chr04	23065366	23069299	28308027	28311905	3879
NamRoo_D62_INS0449970	Chr04	23065366	23069299	28340582	28344462	3881
NamRoo_DG_INS0451610	Chr04	23065366	23069299	28727461	28731339	3879
NamRoo_FH838_INS0447440	Chr04	23065366	23069299	28797191	28801069	3879
NamRoo_FS32_INS0448140	Chr04	23065366	23069299	28420266	28424144	3879
NamRoo_G46_INS0448690	Chr04	23065366	23069299	27886940	27890818	3879
NamRoo_G630_INS0445350	Chr04	23065366	23069299	28922502	28926380	3879
NamRoo_G8_INS0451050	Chr04	23065366	23069299	28619971	28623867	3897
NamRoo_HZ_INS0449960	Chr04	23065366	23069299	29082424	29086322	3899
NamRoo_II32_INS0450770	Chr04	23065366	23069299	28839351	28843229	3879
NamRoo_IR64_INS0452040	Chr04	23065366	23069299	31730445	31734363	3919
NamRoo_LK638S_INS0450600	Chr04	23065366	23069299	28837617	28841498	3882
NamRoo_R498_INS0449000	Chr04	23065366	23069299	27802941	27806839	3899
NamRoo_R527_INS0448390	Chr04	23065366	23069299	28383602	28387500	3899
NamRoo_S548_INS0447660	Chr04	23065366	23069299	27864659	27868557	3899
NamRoo_TM_INS0447800	Chr04	23065366	23069299	27029296	27033174	3879
NamRoo_Tumba_INS0451070	Chr04	23065366	23069299	29350371	29354248	3878
NamRoo_WSSM_INS0450610	Chr04	23065366	23069299	28471679	28475577	3899
NamRoo_XL628S_INS0450120	Chr04	23065366	23069299	28964745	28968641	3897
NamRoo_Y3551_INS0448450	Chr04	23065366	23069299	29144065	29147944	3880
NamRoo_YX1_INS0449170	Chr04	23065366	23069299	27366337	27370235	3899
NamRoo_ZS97RS3_INS0451450	Chr04	23065366	23069299	29178690	29182568	3879
NamRoo_MH63RS3_INS0450850	Chr04	23065366	23069299	29403750	29407628	3879

>NamRoo_127564_INS0450100
tgtagcgcccgttccgtcgtggcgcctagtgggaaaattatctcttaaaaaccctaattgcgaaatttgtttctttgcttgttgtctagtgtccatgccatctgaagatctcaaatccccgatatatcgtcgagttcaattccgaatctaaatccttccaaatcaaatccctccgcaaaagtctattttgcctcccccggggtcgatgggccgaatctctttcggcccatctccccctccctcccggcgctctctctctctctctctctctctcCCTCTCTCCCTTCCCCTCGCTCTGCCCGCGCGTGCGCGAGCGCCGCGCCGAGCGCCCCCTCCCCCTCGCTCTCCTTCTCCCCATCCCTGGCGAGCTCCCCGCCCGCGAAGCCGGCCCCCGCGCGCCGTTGTTCGCGCGCGCGCccgcgtggttgccacccgtgccgcgccgcctgcgccgtccgcgtcacccggccccgttgccctgccgcgcctgcagccgcttggccccgcagccagcgcgcgtgcccgagccgagccactcaatccgccgcgcctcccgttgcaagccgcgcgcgagagccgtggtggccgaccgcctggtcgccaccatcgtcagcgcctgcccgcgcctgtcgcccgtgtcaccgcctcgccgtcatcaccgtcgtcatcgcctcggccccgccactccgcgcgcaagccgccaagggacggaggcagagcccctcctccctctaccacgtcgcccccgctcccctcctccttttcccaaagaggcaaggggcgagccccctttctctccctcattttcccctttttccccccgccggcgtcatcctccctccgtcctgtcgccgatttggccgcgagcgccgagcgccagctcgcgccttgaccgcccaaagtcggtttccaaaccgacattgccgccctttaaacccaggcgccctcccttcctctttCcccccaatcctccccgtttctcgtccgcgccattgccgccacctcctgtgctctgtctcgcctccgccgttcatcgccaagcaccgggagagccggtgcgttcgttgacgcggaaggggactccgggcgctcgtcttcctcctcttccccggcccgaggccggagagatcactcccgcgccgtcggcctctcgtcacagcgccccgcctcatctcggtagtgcctccctccgttcttcctcctcgttccatcttCcccccCTTAGTTTTCGGTAGTAGCACGAGTAGCCTCCCCGTAGCTAGCCGGCGCCGCCCCGACCATTGCCGCTGCTCGCCGTGTGCCCGCCACCGTCGCCGCCCGTGCTTCGTAGCACCCGCTCGTCGCCGGCCTCGCTCGGCGTAGCTCCGCCTAATCTGACGCTAGCAACGAATTCCCGTAGCCGCGTAGATGCTCTCACCGCCGGGAATTGGCCCCTCGTGACCTCGTCGCCGTTTCCCCCTTTTCCCTCCGCCGGGCGCCGCTGCCGCAATCCGCCGCCGACGGACTCCCTCCGGCGAATCCAAGCCGTTGGCTCGCTCCCTCTCATTCTCCCTCGTCATCCCGGTGTACGCCCCGTCGCCCCTCATCGTCGCAAGGCGTCCCGGAGAAACCACCGCCGCCCGCCGTCCATTCGCGGCCGGCACCTTCGTCTTCCTCCCGCCAGCCCGCGTGGCAGCCACGTAGGCGCCACGTCGGCGCCAGCTCGGCCGAGATCGGATCGGGCCGACCCCGGTCAGCCCCTCCCGTGCGCGCGTTCCACCGCGAGCCGTGAGGCTACGTGTGGGCCCACCGCATCCGTTCCACCGCGAACCACGCGCGTGCACCGCATCCCTTCCCCGCCCGTGCGCGTGCGCCGCGTGCTCGCTCAGCACGGTGAACCGTGTCACCGACAAGCGGGTCCTACCCGGGACCACGCGTGGTGAGCCCGGTCCACCGGCCCTccctctcctccccttccgcgcgcgcgcttgggctgccttgggccggtcggcccatttagctcggccggaccgctccgtttctctcgggccgcgccctagccgcccgaggaaaagtatattatccctccctcttttcttttctttttcaaaaaggatttaattaaatccttttcctttagaccaaaaatccaataatcttagaaattcaatatcttcccaaccgtaaatccgtttgactccgttccacttccaaaattcctcaaatctcgagatctatctaatggcacgcttagaggtcattaatagggctttattttcgccgtttgttgagttgtcccgtttcgcgtgtagtttcggagcccgaagacccgcagtgcgaggattttgaggatcaagctccagatttcgagcaaggcaagccacctttgaacatcttgagcctatatttgaatttaattatattgcttgaaaaatattatgcattgataggatcgcacttaatctgtttgtcccgtctgcaaggcagattggcggacctacctagtttgttgcatttgatccttcctttgttaattgttataccatgttcccttgtaaccacccagttgcgcctcgggaatcgtgcactctgtgcgagtaccgacggtcgccttcaaacttcaaatctgagtaacaacttgggttttacaaaagacttggaaaacccgacacctgggtcggtgcttgcgaactaaatgaatttccaaaaccgcggaccggggaacgtaccgggtgtacggttttcccgctcttgcacctaaggaccgtttccttagaatttcatccaaacataagacaagtacgaccacatgggtggaatgggacacccctggctgagtaactagcttatcaggggagccttgatgccgagagacatgtggattcgccggggtggtgtcggggaggacccctgggcttcctggcacagtatggtctgggacctaacctgttgttggtctgggacccctctcgtcggcatatggtaaacctgtgtcggctttggaaatgccttgtcatgaaagcttggaggtctcccgacgtggctgatccccacgggctgggtgatccgggttagtaatgtcgtgtgggtaaagtgtatcccctctgcagaggttaacaaactgttcgaacagccgtgcccacggtcatgggcggatgtgaggtgattcctagcgtagttttgtttgactactgcttgtgaaattgctgttgtggaaaggggttcgatgtttgaaaaatctgcagctgatgggatcagctaggcccgggtggccgtttgaaagttgttggcccgggtggccgtttgaaaagctgttggccgggtgccaaccttgattcaattctaaagactgatacattgcacatactccgaccggacaagacgcactgtcttatccgtgtcgtttgagaagcactcacttagttGttttcagaaaggagttcaaataaaatcaattgtaaaaacaacagacttttcttgaagcctgcattaaacacttatttcccatggcttgctgagtactcccgtactcacccttgctctatataaataatccccccagttgctgaagaagatgaagcggatcctgctgatgaggagttcttccaagagcaagccggctacgatgagtattagggtttcggcctagttcccaagtcgcgcctgtgttgtttggtccaagtcctggcttccgtttcccttttgtaatgcagttgtgagctcGggatctgtccgcagcccaacatgactgtacctctactctataataaagagacctctgttgctgtgataatccgtcttcctatgataacaacactattttctgggactggtatcgattaacaggttaatttggagcgtcacgggctagtttcggtcggtactagtccggggcgtgaca