Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: NamRoo_125827_INS1250320

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-sbtrp: NamRoo | NamRoo

Os XI-3B2: LIU XU | Os125827RS1

Chr12

24448086

24450268

SV Length:

Query Start:

Query End:

Allele sv Count:

2183 bp

5610858

5613040

36 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
NamRoo_117425_INS1238380	Chr12	24448086	24450268	5738198	5740376	2179
NamRoo_125827_INS1250320	Chr12	24448086	24450268	5610858	5613040	2183
NamRoo_127518_INS1241300	Chr12	24448086	24450268	5749133	5751313	2181
NamRoo_127564_INS1246160	Chr12	24448086	24450268	5683749	5685929	2181
NamRoo_127652_INS1245610	Chr12	24448086	24450186	5710019	5712117	2099
NamRoo_127742_INS1249240	Chr12	24448086	24450268	5642314	5644494	2181
NamRoo_127742_INS1249240_1	Chr12	24448086	24450268	11513223	11515403	2181
NamRoo_132424_INS1244860	Chr12	24448086	24450268	5605229	5607409	2181
NamRoo_D62_INS1245270	Chr12	24448086	24450268	5710260	5712440	2181
NamRoo_FH838_INS1244320	Chr12	24448086	24450268	5554857	5556256	1400
NamRoo_FS32_INS1245550	Chr12	24448086	24450268	5635430	5637610	2181
NamRoo_G630_INS1244830	Chr12	24448086	24450268	5645805	5647985	2181
NamRoo_HZ_INS1245930	Chr12	24448086	24450268	5628043	5630223	2181
NamRoo_II32_INS1249260	Chr12	24448086	24450268	5631486	5633666	2181
NamRoo_II32_INS1249260_1	Chr12	24448086	24450268	11495855	11498036	2182
NamRoo_IR64_INS1248100	Chr12	24448086	24450268	5603510	5605690	2181
NamRoo_J4155_INS1245420	Chr12	24448086	24450268	5774513	5776693	2181
NamRoo_J4155S_INS1245890	Chr12	24448086	24450268	5775369	5777549	2181
NamRoo_LK638S_INS1245400	Chr12	24448086	24450268	5607717	5609116	1400
NamRoo_Nipponbare_INS1232700	Chr12	24448086	24450268	6119847	6121246	1400
NamRoo_R498_INS1248070	Chr12	24448086	24450268	5569816	5571215	1400
NamRoo_R498_INS1248070_1	Chr12	24448086	24450268	11145430	11147610	2181
NamRoo_R527_INS1246230	Chr12	24448086	24450268	5576532	5578712	2181
NamRoo_R9311_INS1249960	Chr12	24448086	24450268	5732494	5734674	2181
NamRoo_R9311_INS1249960_1	Chr12	24448086	24450268	11601324	11603504	2181
NamRoo_S548_INS1245250	Chr12	24448086	24450268	5575918	5578098	2181
NamRoo_TM_INS1244930	Chr12	24448086	24450268	5605018	5607198	2181
NamRoo_Tumba_INS1248390	Chr12	24448086	24450268	11921050	11923230	2181
NamRoo_WSSM_INS1245070	Chr12	24448086	24450186	5587732	5589830	2099
NamRoo_XL628S_INS1245930	Chr12	24448086	24450268	5599773	5601172	1400
NamRoo_Y3551_INS1244180	Chr12	24448086	24450268	5555180	5556579	1400
NamRoo_Y58S_INS1241890	Chr12	24448086	24450268	5769961	5772141	2181
NamRoo_YX1_INS1254030	Chr12	24448086	24450268	6266356	6268536	2181
NamRoo_YX1_INS1254030_1	Chr12	24448086	24450268	12087793	12089973	2181
NamRoo_ZS97RS3_INS1244700	Chr12	24448086	24450268	5577089	5578488	1400
NamRoo_MH63RS3_INS1244860	Chr12	24448086	24450268	5558422	5559821	1400

>NamRoo_125827_INS1250320
tgtaatacccCGTgtattAaaagatatttagtttttttagtttgggttgacttgttaaaataaagatgttaacaaaaataaataaaagaaaaatatctttagaagtgggccaacatgagaaggcccataaacccagcccattagttctccctaaaaccaaagagaggggaaccgactcccacctCcccttgtagtgccgccacccctcTccctggccGgcgcctgctttctcctcttatcctatgttcgcatctctcccctctacaacaaattgctctccctagatctccAccttcatagcttggatcAaaaagcgaaatagaaaaacggaacgaggaggaggagAggagtaaaaggaGgggttagatcaaagtctcccctattgtctcctcacaagttttttaaagAaaccctaggtgaggcttttccccttgtcatttcagttgttctagggtggttttagtggtttaattcgtggatAaggaaggttagagaaggagttttgtttgttgtggttcgaattggctgttctgcacgttGgcagatttacagtgtttcggtttttcgaagtttcagagatctaaatgatattttctgcgaaagtgtataactagaaagctgtagataatatttatatctatcTtctacccgaagggcgcgattttatctcaagtggtttagacgatacgaattttttagtataactgttgtttttatgccataatctGgatagtagtagattgaactgtttttggatttgctAaacagtggaatcagCcaagacgcctatagacaaagttgtagaggtttttcttagctttccatattggtaaagtacagcctgattgggcaagtaaaactccAgttatgattgttttagtgcggatagtctgaatttctggacagattgtgaagcctgctttcaagcgcaaattagaccattttaatggcataataaaaatatgatttccacgtaagagttgtagtccttgttctgtagatttccaaaatatatttatttgcggtcatagccttttcatatttcaagatatAaaAGGTTTGAAGCAACAATATTGTTTATAGTGCAAGCGGTGTTCCTTGTTATTGCGTTTTGATGGGATGAGTCTGTAGGTTCACCTTTTTCATTGTTTATATGCATGTTTGAATGTGTTTGCTGAGGTTTTGTTTGTGATTAGGTGGTGGTCCTTCAGATCGTGCATGATACCAACCCTTCATTGGAGGCAAGTGCATGACGAACTAAGTGTGTGATTGATGGATTGTTTGCTCTATCTATTTATTTCCGATATATTTCTATGTGACATGTGACCGCTTATATTCATATTGTTGTTCGCGCCATTTAGGTTTTCATGTTTATCCTATGTTTACGATGTTATTCTTGTTTTAATATTCCGGATTCTGGTTCTGGGTAAATAATTCAAGTTCCTTGTTTGCCATGAATGTGCAATATGGTTTCAATTTGGTTCTTTGATTCCcggtttcaattattcaagtaccatgcgtagtcatgggagtgcaatttggttctttattcaagttcctgtgggtaagcgctgatcacgcttactcggttttaccggcaaatgctaggatgtaTtcactattgtccgggatggaaactactatttcaattcatgcctgtctgggAtgagaactactaTcttctttgacttggtgtttgaaaatgtgtttcctatcaaagaaagaaagccttctgttcatgctttattgccaataatgtgtatatGtgttttctagatccatattgtacttgctgagtatttttAtacttactcttgtGttttatttggttttaggtacatattgagaccgacatgcatgggcgggaagtagcacccttatatacacatttatctgcacactatcaaattatattgcttaggtccataatgatacttaaactatatcatggtttggtcttgtaataatcttttagatttctaatagtttcttccccatggattataaggatagatcatattgtgggaatgatgttgttattagtttaacttataattgtctgtcgtggatgtccgtaTttacaGgggagactctatttaaaTttctaataattttaggagttagtggtttgagtgtatgtttggtgtggcactctaggtacgtggttacctggggtgttacag