Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Lemont_Nipponbare_DEL1112040

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-trp: Lemont | Lemont

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr11

12218979

12221694

SV Length:

Query Start:

Query End:

Allele sv Count:

2753 bp

12070601

12073353

11 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Lemont_117534_DEL1120910	Chr11	12218979	12221695	12618845	12621609	2765
Lemont_G630_DEL1124120	Chr11	12218979	12221695	13529536	13532300	2765
Lemont_Kosh_DEL1110960	Chr11	12218979	12226013	11752694	11760712	8019
Lemont_KY131_DEL1110680	Chr11	12218979	12221694	12066989	12069741	2753
Lemont_NamRoo_DEL1110020	Chr11	12218979	12221694	11701457	11704209	2753
Lemont_Nipponbare_DEL1112040	Chr11	12218979	12221694	12070601	12073353	2753
Lemont_R527_DEL1124480	Chr11	12218979	12221695	13317936	13320700	2765
Lemont_R9311_DEL1125200	Chr11	12218979	12221695	13201198	13203955	2758
Lemont_S548_DEL1124050	Chr11	12218979	12221695	13223911	13226675	2765
Lemont_Tumba_DEL1123540	Chr11	12218979	12221695	13055089	13057852	2764
Lemont_MH63RS3_DEL1125000	Chr11	12218979	12221695	13302701	13305465	2765

>Lemont_Nipponbare_DEL1112040
AAAAAAAAGAAAAAAAATCCGCACCAAAAAAAATCAGAAAAGAAAAGGAAAAAAAAGAAAAGAAGAAATTAGAAAGAAAGAAAAGAGAAAATATTGTTTTGTTTGAGCTGAACTTCATACATCAGAGTGTGCTTGAGTTGTTTCTGGTGCTATTTTGTGGTACCGTTTGTGTCTAGGCTCGCGTCTCTAGTACGTTCTAGCCTAGGACCAGCACGGTACTTGACTTTGAACAATTATTCAACTTTGCGTTCTCTGATTTGAGCATTTGCTATTCCTTTGCTACATATTTAAGCCTACCCAGAGCTCCACAGATTTGATTGCAGCCGTACAGCAAGTGTTTGCCGAGGCATCGATATATCCAACCTCTATTGGGGTGCTTGGTTGAGTCGGTGTACATCACCATTCCACTTGCATTGGTAATATCTTGTAAGAGCTTGGTTAAAAGCTTGAGTGTGTGTGAGATTTGAGCTGCCAGTACCTAGTAGTTGATAGGAGCGTGTATATTCTTGTGTATGTTTCTTGTTTGCTGCTAACCATGGCAGGATTGCGCAAGGGGAAACAAGATGGTCATGCTCAACGTCAACATCTACACCTTCGACGAGATATGACGACTTCTTCACGTGATGCATATGAGGTACATGACTATAATTTTGCACAAGTTGCATGTAAGTTACCAGTCTATGATGGAAAGTATGATTCCGCTGCATACATTAATTGGGAGCTAGCAGTAAAAAAACAATTTGATGAGTATGATTTTTCTAATGCTCAAATGATTAAGGCTGCTAGTAATAAGTGTACCGGTTCTGCATCTTTTTGGTGGCATACTGTGGGGAATAAGCTTGAAACTTGGGATGAATGCAAAATACTGATGAGAAAAAGATTTGTGTTTTCATACTATAGACGTGCTCTCCTTGAGAAATGGGAACATCTAAAACAAGGTGACAAAACTGTTAGGGAGTACTTTCATGATTTTAAAATTTGTATCACTTATAGTGGTTTACAAGAATCTAATGAGAACACAATGACTAGATTTTTCAGAGGGCTTAATTTCAATATTCAGGCTGGGCTTGTTAATGTGACATATAATCATATAGGCCAATTGTTCATGCTTGCTTGCATTGTTGAGCGCAAAATTTTGGAGAATCCAATGGAGCAACAAGATATGCTTGTGCCTCCTATCACTGATGTTTTGCAGGAAGTTCAGAAAAGTCTCCAAAATGAGAAGAACGATATGTTTGAGATGTCACTTCCATCACTCGCGAATGAGGAGAAGGCTGATGCAGCTACATTATCTGAAGAAAGTTCGCAAGGTAAATTAAATGGTGCTGAGAGAAATGAAGGTGAGTATTCTCAAGGTGAGCTACACTTGTCCACTTTTCATGCTATAGTAGAGCAACCATTAGTGGAATCAATTACTGAGTTGCCTTTGTCACAAGTTGATTTACTTGCTGTTCCTTGTGATAAAGAAGAGTTGTGTGATAATGTTTCACTTATATCCATGCCACAACTAGTGAATGAACATGTTAGTTCTACTATTTCTTTGTGTGCTGATTCTAAGCATGTTGTTCACATTGCTAATGAAGTAGAGGAACGCGAATTGCTATCTTCTTTAAATACTTTGGGCTATGTTCAGTTTGATGATTTTTGTGAGCTCGATAATTTGAAGGAGAAATTATTTGCTAAATCTGATTTGCCATGTCCAACTAATGCTATTTTTCATATCTTTGGCGAATATAATGATAGAGGAATATTTTTGGTGCATAGAGTTTACATTTGTTCAGATATAGAACATCTTGTAGTTCCGGATAAAATATGCAAGCTAGAGAGACATGTTACTGCTAATCATATTGTCTCGAGTTTGTCTTGTTTTGATTGCAAGAAACAGGTTGTTTTCAGTGGACTGCGCGAAGAGCACCATATGGAAAAACCGAGGACGGTTTTCTGTGAAGAAGGGGAGGATGATGTGACCATGGCTACTATGGATACGACCATTGCTCACATCATGAATCAACAAGAAGACATCAAGATCAAGTCCTCCATGTGCTGCAATCTGATTCGGCCACGTGTTACATTGCTGACTTCAAACGGCCGCCAAATCTACATACGTGCTCCGTTTTGGGCCCGTGAGTACTTGATGGAAAGCTCTCGAAGTCCTCCTTCCAACGGATCCAGCCTCATCTCGGAAATCTATCTCGTTTGGCCGCAATCACAAAAGCAAGGTGCTGCGTCTCCTGTATTGGGCCAATGGGCTTGTAACTTTGTTTGGGACCCTGGCCCATGTGGGGCCCATGTGGGGTGCGCCCCAATCTGGTGGAGCACGACCCTTGGACCCTCTTAGTCGTCCTCCCACCTCTATAAATAGTTAGGTACCCCTTCAGGGTTTCTTGGGTTTTTGTTAGATTAAAGTTTAGCCATTGCTACTTGCTTGCAGCGCGCGTGTCGGCTAGACCGTCCGTCTGCTTGTTCTTCGGAACCCCAACTTATCATTTGTATTAAATTCCTATTTGCAATATCAGATTGCTTTATTCTTGTTCTTGCTTGTTTCTTCGATTTGCTTGCAGGAATAGGGTTGATCTGCACCGGCAAGATCAACAACCTACGGAGAGGTGTATCGATCGCTAAGGCGCAACACAACGTCTCGTACGGTTGTAGTCGGATCGTCAACGTTTCTCCCAAATCGTAGTTATCACAACTCACCGAAAGATCGGGCCAACAACAGCCTTGAGTGTTGAGAGGAACTCAGGGTTCATCAT