Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Lemont_MH63RS3_INS1119280

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-trp: Lemont | Lemont

Os XI-adm: Minghui 63 | MH63RS3

Chr11

10372302

10373452

SV Length:

Query Start:

Query End:

Allele sv Count:

1149 bp

13179415

13180563

16 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Lemont_02428_INS1114460	Chr11	10372302	10375090	21936227	21938999	2773
Lemont_02428_INS1114460_1	Chr11	10372302	10375441	24704690	24707808	3119
Lemont_117534_INS1116990	Chr11	10372302	10373452	12497644	12498792	1149
Lemont_127742_INS1119070	Chr11	10372302	10373452	13147854	13149002	1149
Lemont_132278_INS1110760	Chr11	10372302	10375441	24070146	24073263	3118
Lemont_G630_INS1119220	Chr11	10372302	10373452	13406257	13407405	1149
Lemont_Kosh_INS1109470	Chr11	10372302	10375441	24083701	24086819	3119
Lemont_NamRoo_INS1108690	Chr11	10372302	10375441	23873949	23877066	3118
Lemont_R498_INS1119020	Chr11	10372302	10373452	12900075	12901223	1149
Lemont_R527_INS1119330	Chr11	10372302	10373452	13194651	13195799	1149
Lemont_R9311_INS1119610	Chr11	10372302	10373452	13078505	13079653	1149
Lemont_S548_INS1119740	Chr11	10372302	10373452	13100629	13101777	1149
Lemont_Tumba_INS1119220	Chr11	10372302	10373452	12932947	12934095	1149
Lemont_YX1_INS1119590	Chr11	10372302	10373452	12668949	12670097	1149
Lemont_ZH11_INS1109760	Chr11	10372302	10375441	24425620	24428738	3119
Lemont_MH63RS3_INS1119280	Chr11	10372302	10373452	13179415	13180563	1149

>Lemont_MH63RS3_INS1119280
TGGGTTTAGCCTGGGCTCGAGGTGCATGGTTTTGATAGTAGCACCTCGGCCACTACAAGGACCATTCTTCGGGCCTCTGTTACAAAGCACTACCGTACTTCCACATGTCTAGTGGGTAAGGCTTAGTTTGTGGCTCTGTCTGGTCATGGGCAAAAGTACACGGATAGAGATGGACGAAGTCGGGGCTCGATGGACATCTCTAGGGCAAATGAGGGCTACACGAGCTGCGGCTCGGTAGTCGAGATGTCATGCCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAACCTTGGTTACCTTTCTCGGGAATCCCGGCCGTAGCCAGGTTGGGTCGGTACTCTTGTTTATGGCTAGGATGGGTTGGGAACTATGTCACGTCTTGCGTCCGTATGCCGTGGTGGTATGTGGCACATGGTTACACGTGAGGAAGATGTGTCTTGTTGGTAAAGATATACACCTCTGATCAGAGTATAATCTATTCGAATAGCCGCGCCCTCGGTTATGGGCAAGCCTAGCAATGTACCCAAGTTAGTGTTTTAATTCTTAAAACCTGCTTAACAACTAAAATGTTGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCTGGGTCTGGTTGCCAGTTCGGTCTGAATCATCGTAGGCCTTGGGTTAAGGCAGGTTCGTGCGGGTTCACGGCCTTGATTAATAACATTGTGTAGCTCTAGAATCGTCTTTACAAAATAGTTTCGGGCATCTAAGTGACTTTTAAATGCTGTTTACTGCAAACCCTAACCCCTTTATTATAACTCCCTTGTACTCCTTTGCATTTATTCTGCATTCGTGGGTGTGTCTTGTTGAGTACGGTGGTTGTACTCAATCTTGCTCAATTTTTCCCCAACCCAGAAGAGGAGTTCCTGGAGGATGAAGGCTTTGGTGTCTAGCTCGTGCCTGTCGTCAAGTGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTTCTGTTTATCTTCGTGTGTGCTGGGCCTTCGTCGCCCATGTAATAAATTAACTATTTATGCTTCCGCTTGTTAAACTCTGAATTGTATCAACTTTTGGTGTACCTTGCCTCCTGGGACAAGGAACAATACACGCACGTATGGAATGCCCGTTGGGTTAATTCCGGTCGTGACA