Variation ID: LK638S_YX1_DEL0424090

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os XI-adm: Longke638S | LK638S
Os XI-adm: YX1 | YX1
Chr04
13897737
13899696
SV Length:
Query Start:
Query End:
Allele sv Count:
1938 bp
27370313
27372250
39
Gene_id Chromosome Start End
OsYX1G0412433900.01 Chr04 27370294 27371205
SV_id Chromosome ref_start ref_end query_start query_end length
LK638S_02428_DEL0437100 Chr04 13897737 13899644 28075461 28077361 1901
LK638S_117425_DEL0427030 Chr04 13897737 13899644 26494687 26496587 1901
LK638S_125619_DEL0424140 Chr04 13897737 13899644 28681137 28683037 1901
LK638S_125827_DEL0422830 Chr04 13897737 13899696 29661846 29663796 1951
LK638S_127518_DEL0418320 Chr04 13897737 13899696 28884887 28886837 1951
LK638S_127564_DEL0421530 Chr04 13897737 13899696 29161011 29162961 1951
LK638S_127742_DEL0417780 Chr04 13897737 13899696 28914733 28916670 1938
LK638S_128077_DEL0434040 Chr04 13897737 13899644 26354606 26356506 1901
LK638S_132278_DEL0435780 Chr04 13897737 13899644 27559521 27561421 1901
LK638S_Azucena_DEL0435680 Chr04 13897737 13899644 26276915 26278815 1901
LK638S_Basmati1_DEL0434530 Chr04 13897737 13899644 26044443 26046343 1901
LK638S_CN1_DEL0419630 Chr04 13897737 13899696 28311983 28313933 1951
LK638S_D62_DEL0425650 Chr04 13897737 13899696 28344540 28346490 1951
LK638S_DHX2_DEL0437150 Chr04 13897737 13899644 26947672 26949572 1901
LK638S_G630_DEL0417650 Chr04 13897737 13899696 28926458 28928408 1951
LK638S_G8_DEL0415880 Chr04 13897737 13899696 28623945 28625882 1938
LK638S_HZ_DEL0417970 Chr04 13897737 13899696 29086400 29088337 1938
LK638S_IR64_DEL0419880 Chr04 13897737 13899696 27272258 27274195 1938
LK638S_J4155_DEL0431300 Chr04 13897737 13899644 27223923 27225823 1901
LK638S_J4155S_DEL0432570 Chr04 13897737 13899644 27791828 27793728 1901
LK638S_Kosh_DEL0436860 Chr04 13897737 13899644 27744207 27746107 1901
LK638S_KY131_DEL0436720 Chr04 13897737 13899644 28172783 28174683 1901
LK638S_Lemont_DEL0435110 Chr04 13897737 13899644 27076944 27078844 1901
LK638S_LJ_DEL0437990 Chr04 13897737 13899644 27075455 27077355 1901
LK638S_NamRoo_DEL0437010 Chr04 13897737 13899644 28031648 28033548 1901
LK638S_Nipponbare_DEL0437230 Chr04 13897737 13899644 27686717 27688617 1901
LK638S_R498_DEL0424120 Chr04 13897737 13899696 27806917 27808854 1938
LK638S_R527_DEL0425480 Chr04 13897737 13899696 28387578 28389515 1938
LK638S_R9311_DEL0419590 Chr04 13897737 13899696 28995439 28997376 1938
LK638S_S548_DEL0425460 Chr04 13897737 13899696 27868635 27870572 1938
LK638S_TM_DEL0417010 Chr04 13897737 13899696 27033252 27035202 1951
LK638S_Tumba_DEL0420300 Chr04 13897737 13899696 29354326 29356276 1951
LK638S_WSSM_DEL0417830 Chr04 13897737 13899696 28475655 28477592 1938
LK638S_Y3551_DEL0426760 Chr04 13897737 13899696 29148022 29149972 1951
LK638S_Y58S_DEL0423550 Chr04 13897737 13899644 28882633 28884533 1901
LK638S_YX1_DEL0424090 Chr04 13897737 13899696 27370313 27372250 1938
LK638S_ZH11_DEL0437510 Chr04 13897737 13899644 27233580 27235480 1901
LK638S_OglaRS2_DEL0444250 Chr04 13897737 13899696 24355235 24357160 1926
LK638S_MH63RS3_DEL0426490 Chr04 13897737 13899696 29407706 29409656 1951

>LK638S_YX1_DEL0424090
CAAGGTCCAAGTGTACTGCTTCGAGGTCCTTTTATTCAATCAGTGCTTTTCGAGTTTTATGATTTATTCATGACAATACCAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGGTAAACCAAATTCTTTTTCCTACTTATTCATGTCCTTTCTTCTTTGTTTCGAACTAAAATGGTGCTTACAAACCAAAAACACGGGAAATATTATTGTAGATGATGATGAAGTTGCTAAGATATATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTGATTATTTTCATATAAATAATTAATAAGTCCAAATGTACAGAATGTTAGGTACTGCTAGTCAGATGATGTGCATGTCAAACTTCCAATTTCAGGTCAATATGGACCTCGCACCTTCCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTATAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGTATGGTTCACAAATCTGACTGCCCTGTATTTGCATTTGTTTATACATAAATGTCCTGAGTCTAAATGTCTTGTTTATAATTTTTAGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAGTGTAATGGATGAAGAACTTTGATGTGCCCCCTCATAATGTAGTAGTATGCCCCCTCCTAGTGTAGTATCTGCACCTTATGTAATGGATACTATGCAGCAGCTTTTGTTCAACTTTAATGGAGGCCATGCAGCAGCTTATGTTCTAAGTTAAGACTGTTATTCTGATGTAATATATTTATCATCTATTTCCCTAAAATTACCTAGTTGTTTGCATCACTTCAAATCTAATATGGCAAGTGTACAGTTTTTATGCTACTGGAGTTGTTGATTGTTGTTGGAATCACTGCTACAAAATTAAAATGGCTGCCCGTTCTGTTCTGAAAACTAAAAACATGCTACGGAAGCTTCATCTTGATTGTTGCTGGAATACTATACTTAATTGGGCTGAAAACACACAGAACAGAAGCAGCTGGCATGAATACAAATGAGTTTAAGAAACTTTAGTTGGCTGGAATACAAATGTAAGGTGCACACACAAGAGCGTCGGACGATGCAGGAACAACAGAGACCACAACAGCAGGAAGCGACGCCCGAGTATTCCGGCTGGATGCGACGGTGGATGCGGCAGGGTGGAGGCGGCGATTTTGATGCGCCTGGCGTCGTCGTGGATGAGTCGGTGCGCCTGCGGATGGCTGGATGAGACAACGAGTTCTTGCGACGGCGGGATGGATGCGCCGGGGTGGAGGCTGCCGCTGTATGCGACGACGGGATGCGCCGCTATTGACGACGGGATGCGGGTTGGACGTCTGCCGCGGCGTCCTCGACGGCGGCAGACGCGTGTTCGACGCGCGGCCGCGGTGGCGTCGAGGGTACGTCGGCCGCGGGGGAATACCTGCGATGAGACGGCGGCTGCGGCGGACAAGATGAGACGCCGGCAACAGATATTGGCGCTTGGCGGCCGCCGCAGACTATTGGCTGGGATGGGCGGTGATTAACGCTACCCTAATTTTGTTTAGCCCCATCATACCCTTCCTAAATCAACAGTACCTCATGGTACCTCGTACCTCATGGTACCTCCTCAAGAATAGAAAATATGCTCTCTGAA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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