Variation ID: LJ_Tumba_DEL1224910

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os GJ-adm: LJ | LJ
Os XI-3: Tumba | Tumba
Chr12
11417877
11428076
SV Length:
Query Start:
Query End:
Allele sv Count:
10220 bp
9353012
9363231
12
Gene_id Chromosome Start End
OsTumbaG1226926000.01 Chr12 9339950 9381838
SV_id Chromosome ref_start ref_end query_start query_end length
LJ_127518_DEL1222420 Chr12 11417877 11428068 27689837 27708375 18539
LJ_127518_DEL1222420_1 Chr12 11417877 11429869 27448799 27460862 12064
LJ_127742_DEL1224340 Chr12 11417877 11428076 8960676 8970897 10222
LJ_G630_DEL1222550 Chr12 11417877 11429870 16790810 16802868 12059
LJ_LK638S_DEL1222490 Chr12 11417877 11428068 28089434 28108004 18571
LJ_LK638S_DEL1222490_1 Chr12 11417877 11429869 27841626 27853696 12071
LJ_R9311_DEL1224070 Chr12 11417877 11428076 9049456 9059671 10216
LJ_Tumba_DEL1224910 Chr12 11417877 11428076 9353012 9363231 10220
LJ_XL628S_DEL1222430 Chr12 11417877 11428068 28040378 28058947 18570
LJ_XL628S_DEL1222430_1 Chr12 11417877 11429869 27792578 27804644 12067
LJ_Y3551_DEL1222080_1 Chr12 11417877 11429869 26245973 26258004 12032
LJ_OglaRS2_DEL1227320 Chr12 11417877 11420749 7746233 7749105 2873

>LJ_Tumba_DEL1224910
CTAGTATGATTTTAGGTAGATGCTTCGCTGTTTAATTAGGTAACATTAGGTGGTTTTTCAACTCTAGACTTTGGGAATATTCATATCACCTGGACACTATGGAATGGTTTGGTTATTGTGGAATTGGCTTCACACCGCTCCTTCTATTCAAAATCCCCAAAATGGTTTTAGGCTGGGCTCGGGGTGCATGGTTTTGATAGTAGCACCTCGGCCATATAAGGACCGGTCTTCGGGCCTCTGTTGCAAAGCACTACCGTACTTCCACATGTCTAGTGGGTAAGGCTTAGTTTGTGGCTCAGTCTAGTTATAAACAAAAGTACACGGATAGAGATGGAAGAAGTCGGGGGTCGATGGACATCTCTAGGACAAATGAAGGCTACACGAGCTGCGGCCCGGTAGTCGAGATGTCATGGCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAGTCCTGCCTGCCTGTCCCGGGGGTTCCGGCCGTAGGTGGGATTGGGTCGGTACTCTTGTCTATGGCTAGGATGGGTTGGAAACTATGTCACGTCTTCCGTCTGTATACCGTGGTGGTATGTGGCACGTGGTTACACGTGAGGAAGATGTGTCCTGTGGGTAAAGATGTACACCTCTGATCAGAGTATAACCTATTCGAATAGCCGCGCCCTCGGTTATGGGCAAGCCGAGCAATGTACCCAAGTTAGTGTTTTAATTCTTAAAACCTGCTTAACAACTAAAATGTGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCTGAATCATCGTAGGCCTTGGGTTAAGGCAGGTTCGTGTGGGTTCACGGCCTTGATAAATAATATTGTATAGTTCTAGGATCGTGTTTACAAAATAGCTTTGAGCAACTAAATATCTTTAAATGCTGTTTACTGCAACCCTAACCCTGTATAGTATAACTCCTTTGTACTCCCTTGCATTTATTCTGCACTTGTGGGTGTGTCTTGTTGAGTACGGTGGTTGTACTCAGTCTTGCTCAATTTTTCCCAAACCCAGAAGAGGAGTTCCTGGAAGATGAAGGCTTTGGTGTCTAGCTCGTGCCTGCCGTCAAGCGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTCTCGTTTGTCTTTGTGTGTGCTGGGCCTTCGCTGCCCATGTAATAAATTAACTATTTACGCTTCCGTTTGTTAAACTCTGAATTGTATCAACTTTTGGAGTACCTTGCCTCCTGGGACAAGGAATAATACACGCATGTAAGGAACGCCCGTTGGGTTATTTCCGGTCGTGACAAGTTGGTATCAGAGCCCCCTTGACCCTAGGACGAGCCTTAGATCCCAAGCCTTAGCAATATTTTCGAAATAAAAATCCTTTGTATTTGTGAAAATCCTCTAGTCTCTCTCTGTCCTGCTGCTTCATTTATCGCCAAAATCTGACCTTTTAAATGTTGCTTTTCTTTTTGTTTTTGTTTGTAGATGGCCGGCAGCGTCAGCCGTCGTGGCTTGGACATGACTGGTTTCGTCTTGGAGCTGCGGGGCATGTGCGTTGTCCTGGGGTATCCGCATGGGTGGACTACCAGGGCAGGCCGCTTCCGGAGCAGGAGGGTGACGATGTAGAGCCCCACGCTGCTTGGGAGGTTACTGCAGTGATCCTCACTGGCTCTCCCGAGCGGACTTCGTTGGCAGTCACCGCGGGTGGAGATTCTTTCTCCGCCGCTTGCCAGAGCGCCGCTCTCCTCGCCATCGGCACTCTTCACCAGCGCTACTCGGACGAGTTGCAGCACTCGCCCTACCGCTACCACCCTCGCCGCGGAGGAGCCCGCGACTACGCCACCTTCCGGGATGCTAGCTCGGAGGATGACGCTACCATCATGCACCTGGCGCGCATGGTGGAGGCGTACGACGCGGCTCGTATCGACTTCCATCAGATGGTGCGCCGTGGGATGGTCGAGAACAATCTGAAGATCCTGGAGCTGCGTCAAGAGAACCTGCAGCTCAAGAAGGACCTAGACGCCGTGGAGGCGCAGCTGCATCAGCTCAAGATCGCCCAGGGAGAGGTCTGTCGCCCCAAGCGTCGCCGCGTCTGCCGCAGCCAGAAGATCACCGCCCGCAAGAGCACCTCCAGGCCCGAGCTTGTTCGTCAGTCCCTGGCGTGGACTTGCTTCGTCGAGACCCCTCGTGCCGAGCCCGCGCCCGTGGTTCCCCAGGAGGGGGAAGCCTCCGGCGTTGGTAGCACGGAGGATGCGCTGTTGCTCACCTTCCGCCCTGGCCCGTCGCAGCGGTAGACGAGCAGTTAGTAGGCTTGCGCGTGTGTTCTTTCTCGTTTGTCTTCTTGTTGGAGTTGTGTGGGGCATGGTTATGCCGGTGTGTGGCATAACTGTGTCGGAGCCTGCCTTTATTTTATTTGCCTAAGCAACTTGAACTTTAATGAACCAATTTAATAGCAGTAATAAATTCAAGAATTATGGTAGTCGTGGGAGGTTAGCTTTAATTGTCAGCTCTCTCTGTTTGCTGGTTCTGTGTGGGGTTTTCAGATGGTGATGACCAGGAGAAGTGCTAATACCGGTGATGGCAACCAACCTGAAGGCAGCAACCACAACCACCAGGGCAGCCCACCTCCACCTCCTCCTCCGCCTCCACCACCACCACCAGATACCAACGCCATTCTCACCCAAATCCTCGCCCAGCAGGCCAACATGATGACTGCTTTCCTCCACCACCTCCAAAATCCGCCACAACAGAATGCTCCACCACCACCCCCACAACACTCTAAACTCACCGAGTTCCTCCGCATCCGTCCACCCACCTTCTCTAGCTCCAACAACCCCGTGGATGCGTTGGATTGGTTGCATGCCGTGGGGAAAAAGCTAGACACTGTGCAGTGCAGCGATGAGGAGAAAGTCATCTTCGCCGCCCACCAACTGCAGGGGCCCGCATCTCTATGGTGGGACCATTTCCAGGCTACGCAGCCAGAGGGGCAGCCTATTACTTGGGCTCGCTTCACCGCCGCTTTCCGGAGAACCCATGTGCCCGCCGGAGTCATGGCCCTTAAGAAAAGGGAATTCCGAGAGTTGAAGCAAGGCCACCGCTCCGTGATGGAGTATTTGCATGAGTTCAACAACCTGGCCCGTTACGCCCCGGAGGATGTGCGGGAAGATGAGGAGAAGCAAGAGAAGTTCTTGGCAGGAATGGACCCTGAGCTGTCCGTCCGTCTAGTCTCCGGGGACTATCCAGATTTCCAACGTCTGGTGGACAAGAGCATCCGCTTGGAAGCCAAGCACAAGGAACTGGAGTCGCACAAGCGCCGCTTGGCGAATTTCCGCAATCAACAGGGTGCTAACCAAAGGGTCCGCTACACCAATCCCTATCCAGGGGGATCGTCCTCGCAGCAGCAACAGCAGCAACAACCTCGCTCCGCGCCCTGACCTCAATTCGTGGTGCGCGTCCCACAGCCGCAGCAACAGCAGAGTCAGCAAGGGACTCGTGCGCCCCGTCCTCCTATGCCAGCCGTGCAGCCTGGTCAAGGCCGCAGGGACGCTCAAGGTCCGTAGCGTCTGTGCTTCAACTGCTTCGAGCCCGGGCACTTTGCGGATAAATGCCCGAAGCCGAGGCGCCAGCAAGGCCAAGCGCCTCCCCGCTCCAACAACGGTGGGAAGGATGTTATTCGGGGTCGTGTGAACCACGTGACGGCCGAGGACGTGCTGACAACTCCAGACGTCATCGTTGGTACGTTCCTCATTCATTCCATCCCTGCTACCATTTTGTTCGACTCTGGAGCATCCCACTCGTTTATATCTGTGCCATTCGTGGGGAGAAATCAGTTGGGGGTAGAAAGGCTTAGGAACCCTCTGCTCATCACCACCCCTGGAGGGGTTATGACAGCAAAGTATTATAGTCCTGCCGTCCCTATAGAAATTCAGGGGATTCCTTTTCCCTCAGATCTGATTCTTCTAGACACCAAGAACTTGGATGTGATCCTTGGGATGAATTGGTTGGCTCAATTCCAAGGAGTAGTGGATTGCGCGAGACGCACTGTTACTCTGTACCGAGGGCCGGAACAACCGGTTGTTTTCTTTGCACCCCCAACCTCTGTCAGAAGTTCAGAACTTCATCAGATAGTACTGTCAGAAATCCCCATCGTCAGGGAGTTCGGAGATGTGTTTCCGGAAGAACTACCCGGTATGCCGCCCAAGCGAGAGATTGAGTTCCGGATAGATCTTGCTCCAGGAACCACTCCTCTGTACAAGCGACCCTACCGTATGGCAGCAAATGAACTGGCCGAAGTTAAGAAACAGTTGGAAGAGTTGAAAGAAAAGGGGTACATACGTCCGAGTACTTCCCCCTGGGGTGCTCCTGTGATTTTTGTGGAGAAGAAAGACAAGACGAAGAGGATGTGCGTTGACTACAGAGCTCTCAATAAAGTCACCATCAAAAACAAGTACCCTCTTCCCCGGATCGATGATCTGTTCGATCAGCTTAAAGGTGCCACGGTATTCTCCAAGATCGATCTTCGTTCCGGATATCACCAGTTGCGCATTAGGGAAGAAGATATTCCGAAGACCGCATTCACCACGCGATACGGACTGTATGAATTCACGGTGATGTCATTCGGTCTAACCAATGCTCCTGCCTTCTTCATGAACTTAATGAACAAAGTGTTCATGAAATACTTGGATAAGTTTGTTGTGGTTTTCATTGATGACATTCTGATATACTCACAATCAGAGGAAGACCATCAGCACCATCTCCGTCTGGTGTTGGGAAAGTTGCGGGAACATCAATTGTATGCCAAACTTAGCAAGTGTGAGTTCTGGTTATCCGAAGTCAAATTCTTAGGGCACGTGATATCTGCTAAAGGAGTTGCTGTGGACCCCGAAACAGTGACCGCCGTCACTGATTGGAAGCAACCCAAGACAGTCACTCAAGTCCGCAGTTTCTTAGGTTTGGCAGGATACTACCGGAGGTTCATCGAGAACTTCTCCAAAATCGCTCGACCCATGACACAGTTGTTGAAGAAAGAAGAGAAATTTGTGTGGAGCCCGCAATGCGAGAAGGCGTTTCAAACTCTCAAAGAAAAGCTGGTTTTCTCGCCAGTGTTAGTCTTGCCAGATACTCGCAAGGATTTCATGGTGTATTGTGACGCTTCGCGCCAAGGATTGGGGTGCGTGCTCATGCAGGACGGTCATGTGGTGGCCTATGCCTCACGCCAGCTACGGCCTCATGAAGGCAACTACCCTACCCATGATTTGGAGTTAGCCGCGGTGGTTCATGCTCTAAAAATCTGGCGGCACTATCTCATTGGGAATCGCTGTGAAATATATACTGATCATAAGAGTTTGAAATACATCTTCACTCAGTCGGATCTGAATCTTCGGCAAAGGAGATGGTTAGAACTCATCAAGGATTATGATGTGGGAATTCACTATCATCCCGGTAAGGCCAACGTGGTTGCCGACGCTCTAAGTCGGAAAAGCCACTGCAACATTCTTAACGTCCGTGGCATTCCACCCGAACTTAATCAACAGATGGAAGCCCTGAACCTAAGCATAGTTGGTCGCGGATTCTTGGCTGCGTTGTAAGCCAAGCCTACCTTGCTTGATCAAATCTGCGAGGCTCAGAAGAACGACCCGGACATGCATGGACTCCTCAAGAATATGAAACAGGGTAAAGCCGCTGGTTTCACAGAGGATGAACACGGAACCCTATGGAACGGAAATCGGGTATGCGTTCCAGATAACAGAGAACTTAAACAGCTGATACTTCAGGAAGCTCACGAAAGTCCTTATTCCATCCACCCTGGCAGTACGAAGATGTACTTAGACTTGAAGGAGAAATACTGGTGGGTTAGTATGAAGCGGGAAATTGCAGAGTTCGTGGCCCTTTGTGATGTGTGCCAGCGTGTCAAGGCAGAGCACCAACGACCGGCCGGACTTCTCCAACCTCTCCAAGTACTAGAATGGAAATGGGATGAAATTGGGATGGATTTCATCACCGGACTTCCAAAAACCCAAGGTGGATATGATTCTATATGGGTAGTTGTGGATCGATTAACCAAGGTAGCTCGATTTATTCCTGTGAAGACCACCTATGGAGGGAACAAACTAGCCGAACTCTACTTCGCTAGGATCGTGAGCCTCCATGGCGTTCCCAAGAAAATCGTATCTGATAGGGGAAGCCAATTCACCTCTCACTTTTGGAAGAAGCTCCAAGAAGAGCTAGGTACCCGATTAAATTTCAGCACCGCGTATCACCCGCAGACAGATGGACAGACCGAGCGTCTAAATCAGATCCTAGAAGATATGCTTCGCGCATGTGCCCTAGATTTCGGGAAGACCTGGGATAAGAGTCTCCCCTATGCCGAGTTCTCCTACAATAACAGCTACCAAGCCAGTATACAAATGGCACCTTATGAAGTGTTGTATGGGCGCAAGTGCCGGACACCGCTTTTGTGGGACCAAGTTGGGGAAAGCCAAGTGTTCGGGACTGATATCCTGAGAGAAGCTGAAGCGAAGGTCAGAACCATTCGGGATAATCTAAAGGTGGCACAGTCCCGGCAGAAAAGTTATGCAGATAACCGTCGCCGTAACCTGGAATTCGCGGTGGACGATTTTGTGTACCTTCGGGTCACGCCATTGCGGGGTGTACACAGGTTTCGGACAAAAGGGAAGCTCGCACCTCGGTTCGTGGGTCCTTTCCGTATCATTGCTCGGCGCGGAGAAGTCGCTTACCAGTTGGAACTGCCTGCCTCCTTGGGCAATGTGCATGATGTGTTCCATGTGTCGCAACTCAAGAAATGTCTCCGAGTGCCATCCGAGCAGGCCGACTCAGAGCAAATTGAAGTTCGCGAAGACTTGACCTACGTGGAGAGGCCAGTGAAAATCCTGGACACCATGGAGCGCAGGACCAGGAACCGGGTAATCCGTTTTTGCAAGGTCCAGTGGAGCAACCACGCCGAAGAAGAAGCTACCTGGGAGCGTGAAGACGAGCTGAAGGCAGCCCATCCCGATCTCTTCGCCAGTTCTTCCGAATCTCGGGGTCGAGATTCCGTTTAAGGGGGGGTAGGTTTGTCGCGTCCCAAAACGACTCTAAAATACATCCTCGAAATTATACATAGAATAAGTAAAATCCATGAGAAAGCCTCCAACAATTACAATGTGCTAAGTTAAAAGTCAAATAAGGCTTGGAGGATTTTTGTACATTTCCTAAAAGCCTAAAATGCGTAAATAAATTTTAGTGGAATTTTCAGAGCACAAATAATAATTAAGAAGAAATAAACAAAGTTAAAATGATTTTACAAAAAGAAAAACCCTAAAAAGTCTTTTTCCCCCCTTCCCATCTTGGGCCGGCTCGGCCCACCTCCCTCCCTCTCTCTCCTCTCCCCCCCGGCCCATCCGGCCTCCTCCCCGCGCGCGCGTGCCGCTGACGGGCGGGCCCGCCCGCCACCCTCGCTGACGGGTGGGGCCCACCCGTCATCCCCTTCCTCCCGCCGCCTCGCCCGTGCCCTAGCGCCGCCGCCGCCGCGAATCCCGCCGCTCCCGTCTGCCCCGCGTGCAATCAAGAGGGGGAATTACTCCCCGTGATTCCCTCCCTCTTTCCCCCCACTTTTCCCTCTCTCTCTCCCTCGGATTCGTTCGAAAACGTTTCCCCCTAAACCTCGCCGGCGCATCAATGGCGGCCGGATCTTCCGCGGCCGATTCCCCCTCATCCGGCCGCTCTCTCCCCCTCCCAACCCTATATAAACACTCCCCGTGCCTCCCTCCGCCGTTTCCGCCACTCGCCGCTCTCTCACTCCGCCGGAATCGAGCTCGCGCCGTCGCTCTCTCTCTCCGCCGTCGCCGCCGAGCTCCGGTCCGCCGCCGTCGTCGCCCCGGACCTTCTCCCGTTTCGGCGTCACCTCCTTCGGCTTCGCCGCAACCTCGCCGACCTCGTCCACCCCTCCGTTTCGCCCGCCGACCGCCGGAACGCCGCCGTCCCCGTCGACCCGAGCCACGCCGCCGCCTTCCTCCGCTCCGGTCGCCGTTCCCGTCGTCGCCGTCGACCCGGGTGAGCCGTGGACCGCCGTTTCGCTTCCCCCTTCCCTCCCCTCTCTCAGGCGCCGCTCCGCCGCGCCGGTGGTCGCCGGCGGCGACCATCGGGGCGCGGGTACGCCGCCTCCCGTCGGCTGTGCCGGCATGGCCGCCTTCGGGCGCGCCCGCGGCTGCCATGTGGGGCCCGGCCGTCAGCCGCCCGCGCCCTCGGGTGCGGCTGACGCGTGGGACCCACGGCGCCGGCCGGCGTAAGCCGCGTGCACCCGGTCCACCGTGGACCGTGAGGCTGCCGCGTGGGCCCCACTCCCGTGGACCCGGTCCGCGCGCTCCTCCCCTCGGCTGACGCAATAAATCCGATTTTAAATTAAAATTTAAATGAAGAAATTCGCAAATATCCATTTAAAGAGCATATAAACTTCAAATGGCCATAACTTGGCCATTTGAACTCGGAATTGGACCGTTCAAGTCTCTAATTTTTCCTTAAGAAGTCAAGAACCCATTTTTGTGCTTTGTTTCTGCTTGTTATATGGAGTTTATTAGAGTATAAGCCTTTTCTTTTCCGTTGGTCGTGTAGACGCTGCAGCTTCGGAAGATCCGCTCTTCGTGGAGGTTGAAGCCGACGTTTGGGAAAGCGAGCAAGGCAAGTCACATCATCCTTGAACATATTGAATCCCAGTTTATAAAATTATGTTGATTCAAATTATTGCATTATCGCTTTATTTAAATTCCCGCGTTATCACTGTTTTATCTAGCCATGCCTATTTACCTTTGTTATGACCTTATTATTATTGTTATTGTTATTATTACCTTGTTCACCCTAGAATAAACAAAACCCCAACTAGTGGACACTCTACTCATGGTATCACTAGTATGATTTTAGGTAGATGCTTCGCTGTTTAATTAGGTAACATTAGGTGGTTTTTCAACTCTAGACTTTGGGAATATTCATATCACCTGGACACTATGGAATGGTTTGGTTATTGTGGAATTGGCTTCACACCGCTCCTTCTATTCAAAATCTCCAAAATGGTTTTAGGCTGGGCTCGGGGTGCATGGTTTTGATAGTAGCACCTCGGCCATATAAGGACCGGTCTTCGGGCCTCTGTTGCAAAGCACTACCGTACTTCCACATGTCTAGTGGGTAAGGCTTAGTTTGTGGCTCAGTCTAGTTATAAACAAAAGTACACGGATAGAGATGGAAGAAGTCGGGGGTCGATGGACATCTCTAGGACAAATGAAGGCTACACGAGCTGCGGCCCGGTAGTCGAGATGTCATGGCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAGTCCTGCCTGCCTGTCCCGGGGGTTCCGGCCGTAGGTGGGATTGGGTCGGTACTCTTGTCTATGGCTAGGATGGGTTGGAAACTATGTCACGTCTTCCGTCTGTATACCGTGGTGGTATGTGGCACGTGGTTACACGTGAGGAAGATGTGTCCTGTGGGTAAAGATGTACACCTCTGATCAGAGTATAACCTATTCGAATAGCCGCGCCCTCGGTTATGGGCAAGCCGAGCAATGTACCCAAGTTAGTGTTTTAATTCTTAAAACCTGCTTAACAACTAAAATGTGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCTGAATCATCGTAGGCCTTGGGTTAAGGCAGGTTCGTGTGGGTTCACGGCCTTGATAAATAATATTGTATAGTTCTAGGATCGTGTTTACAAAATAGCTTTGAGCAACTAAATATCTTTAAATGCTGTTTACTGCAACCCTAACCCTGTATAGTATAACTCCTTTGTACTCCCTTGCATTTATTCTGCACTTGTGGGTGTGTCTTGTTGAGTACGGTGGTTGTACTCAGTCTTGCTCAATTTTTCCCAAACCCAGAAGAGGAGTTCCTGGAAGATGAAGGCTTTGGTGTCTAGCTCGTGCCTGCCGTCAAGCGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTCTCGTTTGTCTTTGTGTGTGCTGGGCCTTCGCTGCCCATGTAATAAATTAACTATTTACGCTTCCGCTTGTTAAACTCTGAATTGTATCAACTTTTGGTGTACCTTGCCTCCTGGGACAAGGAATAATACACGCACGTAAGGAACGCCCGTTGGGTTATTTCCGGTCGTGACA

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.