Variation ID: LJ_Tumba_DEL1215510

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os GJ-adm: LJ | LJ
Os XI-3: Tumba | Tumba
Chr12
8060042
8063192
SV Length:
Query Start:
Query End:
Allele sv Count:
3138 bp
9360094
9363231
25
Gene_id Chromosome Start End
OsTumbaG1226926000.01 Chr12 9339950 9381838
SV_id Chromosome ref_start ref_end query_start query_end length
LJ_02428_DEL1204150 Chr12 8060042 8063192 8429019 8432158 3140
LJ_117425_DEL1209400 Chr12 8060042 8062915 15564726 15567595 2870
LJ_117534_DEL1209740 Chr12 8060042 8063192 7966606 7969751 3146
LJ_125827_DEL1214800 Chr12 8060042 8063195 8294006 8297152 3147
LJ_127518_DEL1214210 Chr12 8060042 8063192 9931069 9934210 3142
LJ_127564_DEL1214230 Chr12 8060042 8063195 8252772 8255922 3151
LJ_127742_DEL1215270 Chr12 8060042 8063192 8967758 8970897 3140
LJ_128077_DEL1206730 Chr12 8060042 8063192 8337859 8341004 3146
LJ_Basmati1_DEL1208520 Chr12 8060042 8063192 8165267 8168412 3146
LJ_CN1_DEL1214480 Chr12 8060042 8063195 8283045 8286190 3146
LJ_DG_DEL1214250 Chr12 8060042 8062915 16176540 16179409 2870
LJ_DHX2_DEL1204840 Chr12 8060042 8063192 8415869 8419012 3144
LJ_G46_DEL1214690 Chr12 8060042 8062494 19557556 19560011 2456
LJ_HZ_DEL1214510 Chr12 8060042 8063192 5701788 5704936 3149
LJ_IR64_DEL1214960 Chr12 8060042 8063192 5677246 5680394 3149
LJ_J4155_DEL1215010 Chr12 8060042 8063195 8494633 8497777 3145
LJ_Kosh_DEL1205180 Chr12 8060042 8063192 8374772 8377915 3144
LJ_Nipponbare_DEL1206260 Chr12 8060042 8063192 8988093 8991236 3144
LJ_R527_DEL1214310 Chr12 8060042 8063192 5650264 5653412 3149
LJ_R9311_DEL1214830 Chr12 8060042 8063192 9056535 9059671 3137
LJ_TM_DEL1213830 Chr12 8060042 8063192 15917963 15921109 3147
LJ_Tumba_DEL1215510 Chr12 8060042 8063192 9360094 9363231 3138
LJ_YX1_DEL1215200 Chr12 8060042 8063192 6340083 6343231 3149
LJ_ZH11_DEL1204360 Chr12 8060042 8063192 8347933 8351073 3141
LJ_ZS97RS3_DEL1214290 Chr12 8060042 8062915 15862272 15865141 2870

>LJ_Tumba_DEL1215510
TGTCGCGTCCCAAAACGACTCTAAAATACATCCTCGAAATTATACATAGAATAAGTAAAATCCATGAGAAAGCCTCCAACAATTACAATGTGCTAAGTTAAAAGTCAAATAAGGCTTGGAGGATTTTTGTACATTTCCTAAAAGCCTAAAATGCGTAAATAAATTTTAGTGGAATTTTCAGAGCACAAATAATAATTAAGAAGAAATAAACAAAGTTAAAATGATTTTACAAAAAGAAAAACCCTAAAAAGTCTTTTTCCCCCCTTCCCATCTTGGGCCGGCTCGGCCCACCTCCCTCCCTCTCTCTCCTCTCCCCCCCGGCCCATCCGGCCTCCTCCCCGCGCGCGCGTGCCGCTGACGGGCGGGCCCGCCCGCCACCCTCGCTGACGGGTGGGGCCCACCCGTCATCCCCTTCCTCCCGCCGCCTCGCCCGTGCCCTAGCGCCGCCGCCGCCGCGAATCCCGCCGCTCCCGTCTGCCCCGCGTGCAATCAAGAGGGGGAATTACTCCCCGTGATTCCCTCCCTCTTTCCCCCCACTTTTCCCTCTCTCTCTCCCTCGGATTCGTTCGAAAACGTTTCCCCCTAAACCTCGCCGGCGCATCAATGGCGGCCGGATCTTCCGCGGCCGATTCCCCCTCATCCGGCCGCTCTCTCCCCCTCCCAACCCTATATAAACACTCCCCGTGCCTCCCTCCGCCGTTTCCGCCACTCGCCGCTCTCTCACTCCGCCGGAATCGAGCTCGCGCCGTCGCTCTCTCTCTCCGCCGTCGCCGCCGAGCTCCGGTCCGCCGCCGTCGTCGCCCCGGACCTTCTCCCGTTTCGGCGTCACCTCCTTCGGCTTCGCCGCAACCTCGCCGACCTCGTCCACCCCTCCGTTTCGCCCGCCGACCGCCGGAACGCCGCCGTCCCCGTCGACCCGAGCCACGCCGCCGCCTTCCTCCGCTCCGGTCGCCGTTCCCGTCGTCGCCGTCGACCCGGGTGAGCCGTGGACCGCCGTTTCGCTTCCCCCTTCCCTCCCCTCTCTCAGGCGCCGCTCCGCCGCGCCGGTGGTCGCCGGCGGCGACCATCGGGGCGCGGGTACGCCGCCTCCCGTCGGCTGTGCCGGCATGGCCGCCTTCGGGCGCGCCCGCGGCTGCCATGTGGGGCCCGGCCGTCAGCCGCCCGCGCCCTCGGGTGCGGCTGACGCGTGGGACCCACGGCGCCGGCCGGCGTAAGCCGCGTGCACCCGGTCCACCGTGGACCGTGAGGCTGCCGCGTGGGCCCCACTCCCGTGGACCCGGTCCGCGCGCTCCTCCCCTCGGCTGACGCAATAAATCCGATTTTAAATTAAAATTTAAATGAAGAAATTCGCAAATATCCATTTAAAGAGCATATAAACTTCAAATGGCCATAACTTGGCCATTTGAACTCGGAATTGGACCGTTCAAGTCTCTAATTTTTCCTTAAGAAGTCAAGAACCCATTTTTGTGCTTTGTTTCTGCTTGTTATATGGAGTTTATTAGAGTATAAGCCTTTTCTTTTCCGTTGGTCGTGTAGACGCTGCAGCTTCGGAAGATCCGCTCTTCGTGGAGGTTGAAGCCGACGTTTGGGAAAGCGAGCAAGGCAAGTCACATCATCCTTGAACATATTGAATCCCAGTTTATAAAATTATGTTGATTCAAATTATTGCATTATCGCTTTATTTAAATTCCCGCGTTATCACTGTTTTATCTAGCCATGCCTATTTACCTTTGTTATGACCTTATTATTATTGTTATTGTTATTATTACCTTGTTCACCCTAGAATAAACAAAACCCCAACTAGTGGACACTCTACTCATGGTATCACTAGTATGATTTTAGGTAGATGCTTCGCTGTTTAATTAGGTAACATTAGGTGGTTTTTCAACTCTAGACTTTGGGAATATTCATATCACCTGGACACTATGGAATGGTTTGGTTATTGTGGAATTGGCTTCACACCGCTCCTTCTATTCAAAATCTCCAAAATGGTTTTAGGCTGGGCTCGGGGTGCATGGTTTTGATAGTAGCACCTCGGCCATATAAGGACCGGTCTTCGGGCCTCTGTTGCAAAGCACTACCGTACTTCCACATGTCTAGTGGGTAAGGCTTAGTTTGTGGCTCAGTCTAGTTATAAACAAAAGTACACGGATAGAGATGGAAGAAGTCGGGGGTCGATGGACATCTCTAGGACAAATGAAGGCTACACGAGCTGCGGCCCGGTAGTCGAGATGTCATGGCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAGTCCTGCCTGCCTGTCCCGGGGGTTCCGGCCGTAGGTGGGATTGGGTCGGTACTCTTGTCTATGGCTAGGATGGGTTGGAAACTATGTCACGTCTTCCGTCTGTATACCGTGGTGGTATGTGGCACGTGGTTACACGTGAGGAAGATGTGTCCTGTGGGTAAAGATGTACACCTCTGATCAGAGTATAACCTATTCGAATAGCCGCGCCCTCGGTTATGGGCAAGCCGAGCAATGTACCCAAGTTAGTGTTTTAATTCTTAAAACCTGCTTAACAACTAAAATGTGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCTGAATCATCGTAGGCCTTGGGTTAAGGCAGGTTCGTGTGGGTTCACGGCCTTGATAAATAATATTGTATAGTTCTAGGATCGTGTTTACAAAATAGCTTTGAGCAACTAAATATCTTTAAATGCTGTTTACTGCAACCCTAACCCTGTATAGTATAACTCCTTTGTACTCCCTTGCATTTATTCTGCACTTGTGGGTGTGTCTTGTTGAGTACGGTGGTTGTACTCAGTCTTGCTCAATTTTTCCCAAACCCAGAAGAGGAGTTCCTGGAAGATGAAGGCTTTGGTGTCTAGCTCGTGCCTGCCGTCAAGCGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTCTCGTTTGTCTTTGTGTGTGCTGGGCCTTCGCTGCCCATGTAATAAATTAACTATTTACGCTTCCGCTTGTTAAACTCTGAATTGTATCAACTTTTGGTGTACCTTGCCTCCTGGGACAAGGAATAATACACGCACGTAAGGAACGCCCGTTGGGTTATTTCCGGTCGTGACA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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