Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: LJ_S548_DEL1121240

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr11

11856839

11861243

SV Length:

Query Start:

Query End:

Allele sv Count:

4418 bp

13223912

13228329

17 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
LJ_02428_DEL1113140	Chr11	11856839	11861243	11755747	11760153	4407
LJ_127742_DEL1120580	Chr11	11856839	11861243	13271141	13275558	4418
LJ_128077_DEL1109700	Chr11	11856839	11861243	11989533	11993936	4404
LJ_132278_DEL1106550	Chr11	11856839	11861243	11705891	11710297	4407
LJ_Azucena_DEL1106980	Chr11	11856839	11861243	11978225	11982631	4407
LJ_DHX2_DEL1104640	Chr11	11856839	11861243	11649224	11653621	4398
LJ_FS32_DEL1118860	Chr11	11856839	11861243	12408635	12413040	4406
LJ_G46_DEL1120260	Chr11	11856839	11864855	12857884	12863696	5813
LJ_G630_DEL1118500	Chr11	11856839	11864855	14208052	14216025	7974
LJ_R498_DEL1119970	Chr11	11856839	11861243	13022699	13027116	4418
LJ_R527_DEL1120760	Chr11	11856839	11861243	13317937	13322354	4418
LJ_S548_DEL1121240	Chr11	11856839	11861243	13223912	13228329	4418
LJ_XL628S_DEL1120710	Chr11	11856839	11864855	14000559	14008604	8046
LJ_Y3551_DEL1120310	Chr11	11856839	11864855	13692033	13700003	7971
LJ_YX1_DEL1119880	Chr11	11856839	11861243	12793870	12798286	4417
LJ_ZH11_DEL1105300	Chr11	11856839	11861243	11885131	11889537	4407
LJ_MH63RS3_DEL1118660	Chr11	11856839	11861243	13302702	13307119	4418

>LJ_S548_DEL1121240
TGATGAACCCTGAGTTCCTCCCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACAATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGCAATCTGATATTGCAAATAGGAATTTAATACGAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGTGACGCAACACCTTGCTTCTGTGATTGCGGCCAAACAAGATAGAATTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCGCAAAACGGAGCACGTATGTAGATTTTGCGACCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAAGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCATCCTCCCCTTCTTCACAGAAAACCGTCCTCGGTTTTTCCATATGGTGCTCTTCGCGCAGTCCGCTGAAAACAACCTGTTTCTTGCAATCAAAACAAGACAAACTCGAGACAATATGATTAGCAGTAACATGTCTCTCTAGCTTGCATATTTTATCCGGAACTACAAGATGTTCTAAATCTGAACAAATGTAAACTCTATGCACCAAAAATATTCCTCTATCATTATATTCGCCAAAGATATGAAAAATAGCATTAGTTGGACATGGCAAATCAGATTTATCAAATAATTTCTCCTTCAAATTATCGAGCTCACAAAAATCATCAAACTGAACATAGCCCAAAGTATTTAAAGAAGATAGCAATTCGCGTTCCTCTACTTCATTAGTAATGTGAACAACATGCTTAGAATCAGCACACAAAGAAATAGTAGAACTAACATGTTCATTCACTAGTTGTGGCATGGATATAAGTGAAACATTATCACACAACTCTTCTTTATCACAAGGAACAGCAAGTAAATCAACTTGTGACAAAGGCAACTCAGCAATTGATTCCACTAATGGTTGCTCTACTATAGCATGAAAAGTGGACAAGTGTAGCTCACCTTGAGAATACTCACCTTCATTTCTCTCAGCACCATTTAATTTACCTTGCGAACTTTCTTCAGATAATGTAGCTGCATCAGCCTTCTCCTCATTCGCGAGTGATGGAAGTGACATCTCAAACATATCGTTCTTCTCATTTTGGAGACTTTTCTGAACTTCCTGCAAAACATCAGTGATAGGAGGCACAAGCATATCTTGTTGCTCCGTTGGATTCTCCAAAGTTTTGCGCTCAACAATGCAAGCAAGCATGAACAATTGGCCTATATGATTATATGTCACATTAACAAGCCCAGCCTGAATATTGAAATTAAGCCCTCTGAAAAATCTAGTCATTGTGTTCTCATTCGATTCTTGTAAACCACTATAAGTGATACAAATTTTAAAATCATGAAAGTACTCCCTAACAGTTTTGTCACCTTGTTTTAGATGTTCCCATTTCTCAAGGAGAGCACGTCTATAGTATGAAAACACAAATCTTTTTCTCATCAGTATTTTGCATTCATCCCAAGTTTCAAGCTTATTCCCCACAGTATGCCACCAAAAAGATGCAGAACCGGTACACTTATTACTAGCAGCCTTAATCATTTGAGCATTAGAAAAATCATACTCATCAAATTGTTTTTCTACTGCTAGCTCCCAATTAATGTATGCAGCGGAATCATACTTTCCATCATAGACTGGTAACTTACATGCAACTTGTGCAAAATTATAGTCATGTACCTCATATGCATCACGTGAAGAAGTCGTCATATCTCGTCGAAGGTGTAGATGTTGACGTTGAGCATGACCATCTTGTTTCCCCTTGCGCAATCCTGCCATGGTTAGCAGCAAACAAGAAACATACACAAGAATATACACGCTCCTATCAACTACTAGGTAGTGGCAGCTCAAATCTCACACACACTCAAGCTTTTAACCAAGCTCTTACAAGATCTTACCAATGCAAGTGGAATGGTGATGTACACCGACTCAACCAAGCACCCCAATGGAGGTTGGATGTATCGATGCCTTGGCAAACACTTGCTGTACGGCTGCAATCAGATCTGTGGAGCTCTGGGTAGGCTTAAATATGTAGCAAAGGAATAGCAAATGCTCAAATCAGAGAACGCAAAGTTGAATAATTGTTCAAAGTCAAGTACCGTGCTGGTCCTAGGCTAGAACGTACTAGAGACGCGAGCCTAGACACAAACGGTACCACAAAATAGCACCAGAAACAACTCAAGCACACTCTGATGTATGAAAGCAAACTCAAAGATACAACTAATTTTTCCTTTTGCTTCTTTCTTTCCTTTTCTTTCTTTTCTATTTTCTTTTCTTTTTCTTTTCTCTTTTTTTTTCTTGGTGCGGCTTTTCTTCTCTTTTTTTTATGCACCTTTCTGCCTTTTTTTTTCTTTCTTTTTTTTATTTTTTTTACCAAAAACTGACTCAAGGACCTTAATGTAAGGTTACAGGGACTCAAACGTAAATATAAAATTTACAGGGACTCAAATGTAAAAGTCTAAACCCAAAATTAAAATTATACAAAAAAAATGGAATGCTGAATATATGCTGATTCCGTTTTTCCAAACAGATCTCGAAACCGACACCAAACAAAAATTCGCCAAGGTGTTTGACACAACTCGGAACCGTGGAAGAGAGGGAGGGAGTCGGACTCGACCAAAGGGGCGAGTGGGACTCGGCCAGGAGGTGGAGTGGATGGCAGCCGAATTTGGTGTATGGGATAAAAAGGAAACTGAATTTTAACCAATCCAATCTACTATATCTTTCCAAAACAAACTTGACTACTTCCAAAATCAGATATGGTAATTCACCTTCCTCCTCTCGTGCACGACACAGGCACGGCCAAAAAAAACACACACAAGGATCGGCAAACTCTAGATGCAACTCAAGAACTCCAAAACTAACCGACAGAAACTTCTGAAAACTACAAAAATAGAACCGTGGCAGCGAGCCAATTCCGTTTTTGTAGGTCCCGACAACAACAGAGACACGGTGGCAGCGACGACTGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAGCTAGACGCTAAGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAATATGGCTAGGTAAATGATACGAATTTTTTTGTATGGCTATTTTCTGGTTATAGGAAGATAAAAACTCACCGAGCAACGAAAGCTCTGATACCACCTGATGAACCCTGAGTTCCTCCCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACAATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGCAATCTGATATTGCAAATAGGAATTTAATACGAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGTGACGCAGCACCTTGCTTCTGTGATTGCGGCCAAACAAGATAGAATTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCGCAAAACGGAGCACGTATGTAGATTTTGCGACCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAAGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCA