Variation ID: LJ_R527_DEL1108000

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os GJ-adm: LJ | LJ
Os XI-1B: R527 | R527
Chr11
5384986
5386968
SV Length:
Query Start:
Query End:
Allele sv Count:
1984 bp
62384
64367
74
There is no gene in this region.
SV_id Chromosome ref_start ref_end query_start query_end length
LJ_02428_DEL1105740 Chr11 5384986 5386968 54264 56247 1984
LJ_117534_DEL1106550 Chr11 5384986 5396362 11241780 11253197 11418
LJ_117534_DEL1106550_1 Chr11 5384986 5397553 12608385 12625422 17038
LJ_117534_DEL1106550_2 Chr11 5384986 5397553 17599844 17612437 12594
LJ_125619_DEL1107760 Chr11 5384986 5397198 22045445 22057506 12062
LJ_125619_DEL1107760_1 Chr11 5384986 5397553 31613198 31625741 12544
LJ_125827_DEL1106740_2 Chr11 5384986 5396204 22113088 22124361 11274
LJ_125827_DEL1106740_3 Chr11 5384986 5396285 25027104 25038435 11332
LJ_125827_DEL1106740_4 Chr11 5384986 5397553 23099125 23111733 12609
LJ_127564_DEL1107900 Chr11 5384986 5397553 28036327 28048893 12567
LJ_127652_DEL1108240 Chr11 5384986 5386968 153707 155690 1984
LJ_127652_DEL1108240_2 Chr11 5384986 5390713 6591775 6597484 5710
LJ_127652_DEL1108240_3 Chr11 5384986 5397553 12593067 12605681 12615
LJ_128077_DEL1105560 Chr11 5384986 5397553 29767847 29780305 12459
LJ_Basmati1_DEL1105540_1 Chr11 5384986 5397553 29512142 29525605 13464
LJ_CN1_DEL1107740 Chr11 5384986 5396204 22663418 22674687 11270
LJ_CN1_DEL1107740_1 Chr11 5384986 5397553 22166108 22178651 12544
LJ_D62_DEL1108020 Chr11 5384986 5386968 126493 128475 1983
LJ_D62_DEL1108020_1 Chr11 5384986 5397553 20653860 20666432 12573
LJ_DG_DEL1108430 Chr11 5384986 5386968 126465 128448 1984
LJ_DG_DEL1108430_1 Chr11 5384986 5388138 24663899 24667021 3123
LJ_DG_DEL1108430_2 Chr11 5384986 5396098 16049291 16060372 11082
LJ_DG_DEL1108430_3 Chr11 5384986 5397553 6680785 6693398 12614
LJ_DG_DEL1108430_4 Chr11 5384986 5397553 7516776 7529242 12467
LJ_FS32_DEL1108160 Chr11 5384986 5386968 126460 128443 1984
LJ_FS32_DEL1108160_2 Chr11 5384986 5397553 21260120 21272691 12572
LJ_G630_DEL1107020 Chr11 5384986 5397553 32884182 32896720 12539
LJ_HZ_DEL1108740 Chr11 5384986 5386968 137539 139522 1984
LJ_HZ_DEL1108740_1 Chr11 5384986 5396098 14805070 14816156 11087
LJ_HZ_DEL1108740_2 Chr11 5384986 5396204 22285604 22296877 11274
LJ_II32_DEL1108390 Chr11 5384986 5386968 126767 128750 1984
LJ_II32_DEL1108390_1 Chr11 5384986 5396098 14664978 14676061 11084
LJ_II32_DEL1108390_3 Chr11 5384986 5397553 23178605 23191184 12580
LJ_IR64_DEL1107890 Chr11 5384986 5386802 10960294 10962114 1821
LJ_IR64_DEL1107890_1 Chr11 5384986 5386802 13171304 13173124 1821
LJ_IR64_DEL1107890_2 Chr11 5384986 5396098 13743305 13754390 11086
LJ_IR64_DEL1107890_3 Chr11 5384986 5396204 21135719 21146992 11274
LJ_J4155_DEL1107890 Chr11 5384986 5388152 6905492 6908812 3321
LJ_J4155_DEL1107890_1 Chr11 5384986 5396098 14313185 14324270 11086
LJ_J4155S_DEL1107790 Chr11 5384986 5396098 14825584 14836674 11091
LJ_Kosh_DEL1103070 Chr11 5384986 5396070 5924364 5935416 11053
LJ_LK638S_DEL1108080 Chr11 5384986 5386968 136976 138959 1984
LJ_LK638S_DEL1108080_1 Chr11 5384986 5396098 14857609 14868699 11091
LJ_LK638S_DEL1108080_2 Chr11 5384986 5396204 22188121 22199394 11274
LJ_R498_DEL1107950 Chr11 5384986 5397553 13012254 13029276 17023
LJ_R527_DEL1108000 Chr11 5384986 5386968 62384 64367 1984
LJ_R527_DEL1108000_1 Chr11 5384986 5386968 11753962 11755941 1980
LJ_R527_DEL1108000_2 Chr11 5384986 5387565 29327846 29330426 2581
LJ_R527_DEL1108000_3 Chr11 5384986 5388056 31130189 31133257 3069
LJ_R527_DEL1108000_4 Chr11 5384986 5397553 13307490 13324514 17025
LJ_R527_DEL1108000_5 Chr11 5384986 5397553 6590386 6603280 12895
LJ_S548_DEL1108660 Chr11 5384986 5386968 126514 128498 1985
LJ_S548_DEL1108660_1 Chr11 5384986 5386968 11792355 11794334 1980
LJ_TM_DEL1108600 Chr11 5384986 5390713 6849185 6854893 5709
LJ_TM_DEL1108600_1 Chr11 5384986 5393192 3122035 3130267 8233
LJ_Tumba_DEL1107730 Chr11 5384986 5397553 13044648 13061663 17016
LJ_Tumba_DEL1107730_1 Chr11 5384986 5397553 8398276 8407263 8988
LJ_WSSM_DEL1106660 Chr11 5384986 5386968 126478 128459 1982
LJ_WSSM_DEL1106660_1 Chr11 5384986 5396098 14196613 14207694 11082
LJ_WSSM_DEL1106660_2 Chr11 5384986 5396204 21741663 21752928 11266
LJ_XL628S_DEL1108430 Chr11 5384986 5386968 132025 134008 1984
LJ_XL628S_DEL1108430_1 Chr11 5384986 5396098 14851647 14862735 11089
LJ_XL628S_DEL1108430_2 Chr11 5384986 5397553 22934136 22946722 12587
LJ_Y3551_DEL1107650 Chr11 5384986 5386968 11711963 11713942 1980
LJ_Y3551_DEL1107650_1 Chr11 5384986 5397553 13085083 13102099 17017
LJ_Y58S_DEL1105990 Chr11 5384986 5396362 12586472 12597888 11417
LJ_Y58S_DEL1105990_1 Chr11 5384986 5397553 13971597 13988618 17022
LJ_YX1_DEL1108290 Chr11 5384986 5396354 27725074 27736424 11351
LJ_YX1_DEL1108290_1 Chr11 5384986 5397553 12783430 12800446 17017
LJ_ZS97RS3_DEL1108440 Chr11 5384986 5386968 138057 140040 1984
LJ_ZS97RS3_DEL1108440_1 Chr11 5384986 5396098 14807179 14818262 11084
LJ_ZS97RS3_DEL1108440_2 Chr11 5384986 5396204 22303696 22314969 11274
LJ_ZS97RS3_DEL1108440_4 Chr11 5384986 5397553 23348875 23361461 12587
LJ_MH63RS3_DEL1107030 Chr11 5384986 5397553 13292255 13309279 17025

>LJ_R527_DEL1108000
TGTCACGCCCAGAAATTCCCGAATGGAATCCCAAGCAGAATGTGCATTAAAATCCCCGTCCAGGACCAGCCGGGGTACACAAACGACAATGTTGACATACAGACCCACGTCTTACAAACATAATAAAGTCTTACATAAATGCAGCGGAAAAAAGAAGAAACTGAAGCTAAGCCTTGACTAAACTGCAGCGGGAACACCACTCCACAGGCATCCTCGACGGCACGGACGAAGCCTACTCCTCAGAGAAAACTTCATCTGACCCGAACTCGAACTCTGGGGGTTGGGAAAAAAAATAGAGCAAGGCTGAGTACTACCCACTGTACTCAGCAAGTCATACCGGAATAGAGGTATGATGCAGGGAATCATCAAAGAAGAGCTAAAGTGGTTCATTTGCATAAAGCGAGCATTTATAAACAGAGATTGAAAGATTTAAACAGTTGTAATAATTAAGCAGTATTAATCATTCACTGTCCAACGCTACACCACGTTGCAACAGGCCCAACCATCCACCTAAACTATCCAAATTAACGGATTACACTAAGGTGAGACTAATCACGGTGAATCTGGTTGACCGCCCATAACCGCGGGCACGGCTATTCGAATAGTTTTACTCTGATCAGAGGTGTACAACTGTACCCACAAGACACAGCCCCACGATACGTTTCCGTGCGCCGACATGTCACCACGACATACCGGAAAGAGGCCGTGACAGGACCCTTCGCATAACCCCCTCTAGCCAAGCACACCACACCTCAGGTTTCACCCCCGTCCCCAGCGGGCAACGGGCAGTCCCCTCTCGTGCCTAGGTGAATCCGGAAGCGACAGAGGCCGTCGCAGGGCCCGCCCCGCTCCATCACGCCCACCCTTGCCTGGATGCGTCGACTAGAGGAAAGCTACACTACAAGCCCAGCCGTTGCCCACGCTGGCTTGTGGTAAGTACGTTAAGTTCTTCCAGGGCATCCCGCGAACCGGTCCTTAACTGCCATGGGTGCGACCAGCAAAACCATGCACCCACAGCCCACCATGTGGTTCATTTTATTAACCAACACCAGAGCGGTGGTACTAAACCAACATTACCAGAAGAACCTACAGTCTAAACATTAATAAGATTTTTCCCCAATGTGAACTAGTTGAACTAAGCATGGCTAAGGAATTCCTAGTCCAAAGTCTAATCATGTTGTAACCCAAGCTAACAAAGGAGCATGATATCCAAAAGCATGGCTGTAACAATAGGTAACCATCCCATAGTAGTATTATAAAACAATGCAATATTTGAAAGGAAACAATAGAGCATTTGCAATATAGGATCAATATGTTCAAATGACAAGCATGACTTGCCTTGCTCTGCTGCTGGAGGGACCTCGGCGACTATCTCGAAGTACACCGGAGCGTCGGAGGAATCGGAATCTAGCGACATACAAAGCAAACAATGCAAACAGGCTATAAGACTACTGAAACAGAGAACAAAACCATTTTTAATGGATTCTACACATTTTTCTTGATTTACTGAGACTTGAATGGGTTTAAACGGAGCTCGGATGAATTAGTTATGAATTTTAGAAGATTCACTGTGTTTATTACTATAAAAGAAATCCTTAAATAATTTATTGTGCAATATTAACCAGGGCTGACGTCAGCAAGGGGGGTGCGGTGCCGACATGCGGGCCCCACCGGTCAGCGACCCGGGAGAGAGAGAAAGGGGCGGCGGCTCGCGGGCCCACTGTCAGCGGCACGGGAGATGGAAGGGGCGGCGGCGCCACGTGGCGGCCGGACCGACGGCCCCGATCTACCCAAGGGTAGATCGGACGGCGGCGGGAGCTCGCGGCCGGGGCGCACGTGCGCGGCGCAAGACGGCGGCGACCATGGCGCCGGCGGCGCAGCGCTCACGCGGCGGCGGCGCGCATGCGGCAGCGGCGCAAGGCGACGACCGACGGCGACCGACCGGCGGCGGAGAGCGGCGGCTAGAGGGGAGAGAACGGGCGGC

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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