Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: LJ_LK638S_TRA1246980

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

TRA

Os GJ-adm: LJ | LJ

Os XI-adm: Longke638S | LK638S

Chr12

22804911

22807111

SV Length:

Query Start:

Query End:

Allele sv Count:

1418 bp

5607714

5609131

6 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
LJ_FH838_TRA1247800	Chr12	22804911	22807111	5554854	5556271	1418
LJ_LK638S_TRA1246980	Chr12	22804911	22807111	5607714	5609131	1418
LJ_R498_TRA1248350	Chr12	22804911	22807111	5569813	5571230	1418
LJ_Y3551_TRA1247570	Chr12	22804911	22807111	5555177	5556594	1418
LJ_ZS97RS3_TRA1248120	Chr12	22804911	22807111	5577086	5578503	1418
LJ_MH63RS3_TRA1248050	Chr12	22804911	22807111	5558419	5559836	1418

>LJ_LK638S_TRA1246980
TTACTGTAACGCCCCAGGTAACCACGTAGCTAGAGTGCCACATCAAACATACACTCAAACCACTAACTCCCAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTGTAAATACGGACATCCACGACAGGCAATTATAAGTTAAACTAATAACAGTATCATTCCCACAATACGATCCATCCTTATAATCCATGGGGAAGAAACTATTAGAAATCTAAAAGATTATTACAAGACCGAACCATGATATAATTTAAGTATCATTATGGACCTAAGCAATATAGTTTGATAGTGTGCAGATAAATGTGTATATAAGGGTGCTACTTCCCGCCCATGCATGTCGATCTCAATATGTACCTAAAACCAAATAAAACACAAGAGTGAGTATAAAAATACTCAGCAAGTACAATATGGAACTAGAAAACATATATACACACCATTGGCAATAAAGTATAAACAGAAGGCTTTCTTTCTTTGATAGGAAACATATTTTCAAACACCAAGTCAAAGAAGATAGTAGTTCCCATCCGGGGGAGGCATGAATTGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCATTCCCATGACTACGCATGGTACTTTCATTGAAACCAGAATCAAAGAACCAAATTGAAACCATATTGCACATTTATGGCAAACAAGGAACTTGAATTATTTACCCAGAACAAGAATCCGGAATATTGAAAGAAGAATAACATCGTAAACATAGGATAAATATGGAAACCTAAATGGCGCGAACAACAATATGAATATAAGCGGTCACATGTCACATAGAAATATATCGGAAATAAATAGATAGAGCAAACAATCCATCAATCACACACTTAGTTCATCATGCACTTGCCTCCAATGAAGGTTTGGTATCATGCACGATCTGAAGGACCACCACCTAGGGTTTCTTTAGAGAACTTGTGAGGAGACAATAGGGGAGACTCTGATCTAACCCCTCCTTTTACTCCTCTCCTCCTCCTCGTTCCGTTTTTCTATTTCGCTTTTCGATCCAAGCTATGAAGGTGGAGATCTAGGGAGGGCAATTTGTTGTAGAGAGGAGAGATGTGAACATAGGAGAAGGGGAGGAAGGAGGCGCCGGCCAGGGAGAGGGGTGGCGGCACTATGAGGGGAGGTGGGAGTCGGTTCCCCTCTCTCTTGGTTTTAGGGAGAACTAATGGGCTGGATTTATGGGCCTTCTCATGTTGGCCCACTTCTAAAGATATTTTTCTTTTATTTATTTGTGTTAACATCTTTATTTTAACAAGTCAACCCAAATTAAAAAAACTAAATATCTTTTAATATACGGGGTATTACAGTTACCTAATTAATT