Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: KY131_R498_TRA1247220

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

TRA

Chr12

22500290

22502488

SV Length:

Query Start:

Query End:

Allele sv Count:

1418 bp

5569813

5571230

6 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
KY131_FH838_TRA1243160	Chr12	22500290	22502488	5554854	5556271	1418
KY131_LK638S_TRA1247680	Chr12	22500290	22502488	5607714	5609131	1418
KY131_R498_TRA1247220	Chr12	22500290	22502488	5569813	5571230	1418
KY131_Y3551_TRA1242920	Chr12	22500290	22502488	5555177	5556594	1418
KY131_ZS97RS3_TRA1247350	Chr12	22500290	22502488	5577086	5578503	1418
KY131_MH63RS3_TRA1243170	Chr12	22500290	22502488	5558419	5559836	1418

>KY131_R498_TRA1247220
TTACTGTAACGCCCCAGGTAACCACGTAGCTAGAGTGCCACATCAAACATACACTCAAACCACTAACTCCCAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTGTAAATACGGACATCCACGACAGGCAATTATAAGTTAAACTAATAACAGTATCATTCCCACAATACGATCCATCCTTATAATCCATGGGGAAGAAACTATTAGAAATCTAAAAGATTATTACAAGACCGAACCATGATATAATTTAAGTATCATTATGGACCTAAGCAATATAGTTTGATAGTGTGCAGATAAATGTGTATATAAGGGTGCTACTTCCCGCCCATGCATGTCGATCTCAATATGTACCTAAAACCAAATAAAACACAAGAGTGAGTATAAAAATACTCAGCAAGTACAATATGGAACTAGAAAACATATATACACACCATTGGCAATAAAGTATAAACAGAAGGCTTTCTTTCTTTGATAGGAAACATATTTTCAAACACCAAGTCAAAGAAGATAGTAGTTCCCATCCGGGGGAGGCATGAATTGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCATTCCCATGACTACGCATGGTACTTTCATTGAAACCAGAATCAAAGAACCAAATTGAAACCATATTGCACATTTATGGCAAACAAGGAACTTGAATTATTTACCCAGAACAAGAATCCGGAATATTGAAAGAAGAATAACATCGTAAACATAGGATAAATATGGAAACCTAAATGGCGCGAACAACAATATGAATATAAGCGGTCACATGTCACATAGAAATATATCGGAAATAAATAGATAGAGCAAACAATCCATCAATCACACACTTAGTTCATCATGCACTTGCCTCCAATGAAGGTTTGGTATCATGCACGATCTGAAGGACCACCACCTAGGGTTTCTTTAGAGAACTTGTGAGGAGACAATAGGGGAGACTCTGATCTAACCCCTCCTTTTACTCCTCTCCTCCTCCTCGTTCCGTTTTTCTATTTCGCTTTTCGATCCAAGCTATGAAGGTGGAGATCTAGGGAGGGCAATTTGTTGTAGAGAGGAGAGATGTGAACATAGGAGAAGGGGAGGAAGGAGGCGCCGGCCAGGGAGAGGGGTGGCGGCACTATGAGGGGAGGTGGGAGTCGGTTCCCCTCTCTCTTGGTTTTAGGGAGAACTAATGGGCTGGATTTATGGGCCTTCTCATGTTGGCCCACTTCTAAAGATATTTTTCTTTTATTTATTTGTGTTAACATCTTTATTTTAACAAGTCAACCCAAATTAAAAAAACTAAATATCTTTTAATATACGGGGTATTACAGTTACCTAATTAATT